miRNA display CGI


Results 1 - 20 of 27 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27943 3' -51.6 NC_005886.2 + 46155 0.66 0.860266
Target:  5'- -aCGguucAACGCCCAuCGCACGCuguUGCUu -3'
miRNA:   3'- uaGCa---UUGUGGGU-GCGUGUGu--AUGGc -5'
27943 3' -51.6 NC_005886.2 + 28589 0.66 0.860266
Target:  5'- cUCGaUGACAUgcgaCAUGCGCugGUGCCc -3'
miRNA:   3'- uAGC-AUUGUGg---GUGCGUGugUAUGGc -5'
27943 3' -51.6 NC_005886.2 + 32104 0.66 0.85157
Target:  5'- aAUCac-GCGCCCAcugcgcgagcCGUACGCGUACCu -3'
miRNA:   3'- -UAGcauUGUGGGU----------GCGUGUGUAUGGc -5'
27943 3' -51.6 NC_005886.2 + 6722 0.66 0.842625
Target:  5'- -gCGUGACGCaauCCACGCACAUuca-CGa -3'
miRNA:   3'- uaGCAUUGUG---GGUGCGUGUGuaugGC- -5'
27943 3' -51.6 NC_005886.2 + 23787 0.66 0.83344
Target:  5'- gGUCG-AACAUCUACGgCACaACGUugCGc -3'
miRNA:   3'- -UAGCaUUGUGGGUGC-GUG-UGUAugGC- -5'
27943 3' -51.6 NC_005886.2 + 19479 0.67 0.814391
Target:  5'- cUCGUcGCugCgACGUACACAacgccagcgGCCGg -3'
miRNA:   3'- uAGCAuUGugGgUGCGUGUGUa--------UGGC- -5'
27943 3' -51.6 NC_005886.2 + 40255 0.67 0.80455
Target:  5'- uUUGUGAaGCCCuGCGCGCggcugGCGUACCu -3'
miRNA:   3'- uAGCAUUgUGGG-UGCGUG-----UGUAUGGc -5'
27943 3' -51.6 NC_005886.2 + 20745 0.67 0.794513
Target:  5'- uUCGUucACAUCCACGC-CAUcaACCGc -3'
miRNA:   3'- uAGCAu-UGUGGGUGCGuGUGuaUGGC- -5'
27943 3' -51.6 NC_005886.2 + 35323 0.67 0.794513
Target:  5'- cGUCGUGcucGCGCCaguuCGCugACAUGCa- -3'
miRNA:   3'- -UAGCAU---UGUGGgu--GCGugUGUAUGgc -5'
27943 3' -51.6 NC_005886.2 + 29843 0.67 0.784292
Target:  5'- cGUCGUuuu-CCCAUGCGCGCAUcGCUu -3'
miRNA:   3'- -UAGCAuuguGGGUGCGUGUGUA-UGGc -5'
27943 3' -51.6 NC_005886.2 + 16106 0.67 0.784292
Target:  5'- -gCGUGACcCCCaagguaACGCGCACAU-CCu -3'
miRNA:   3'- uaGCAUUGuGGG------UGCGUGUGUAuGGc -5'
27943 3' -51.6 NC_005886.2 + 38711 0.68 0.7739
Target:  5'- -aCGU--CGCCCGCGC-CGCAucUACCa -3'
miRNA:   3'- uaGCAuuGUGGGUGCGuGUGU--AUGGc -5'
27943 3' -51.6 NC_005886.2 + 45217 0.68 0.7739
Target:  5'- cGUCGUcGAUGCCguCGCGCugAUACUu -3'
miRNA:   3'- -UAGCA-UUGUGGguGCGUGugUAUGGc -5'
27943 3' -51.6 NC_005886.2 + 28692 0.68 0.7739
Target:  5'- uAUUGUGAUGCCCGCuGaUACGCGUcgcACCGu -3'
miRNA:   3'- -UAGCAUUGUGGGUG-C-GUGUGUA---UGGC- -5'
27943 3' -51.6 NC_005886.2 + 20981 0.68 0.746168
Target:  5'- uUCGUAGuCACCCGUGCuauugaacccgguagGCACAgUGCCGa -3'
miRNA:   3'- uAGCAUU-GUGGGUGCG---------------UGUGU-AUGGC- -5'
27943 3' -51.6 NC_005886.2 + 21213 0.68 0.741821
Target:  5'- uUCGcgAGCACCUGCGC-CGCGUcgACCu -3'
miRNA:   3'- uAGCa-UUGUGGGUGCGuGUGUA--UGGc -5'
27943 3' -51.6 NC_005886.2 + 37231 0.68 0.741821
Target:  5'- --aGUAACACUgAUgGCACACGUACgGa -3'
miRNA:   3'- uagCAUUGUGGgUG-CGUGUGUAUGgC- -5'
27943 3' -51.6 NC_005886.2 + 25690 0.68 0.73087
Target:  5'- -gCGUGGCACaaugCACGCuguCACAUcaACCGa -3'
miRNA:   3'- uaGCAUUGUGg---GUGCGu--GUGUA--UGGC- -5'
27943 3' -51.6 NC_005886.2 + 1070 0.68 0.72977
Target:  5'- -gCGUcACGCCCAUGCAggccgucCACuUACCGc -3'
miRNA:   3'- uaGCAuUGUGGGUGCGU-------GUGuAUGGC- -5'
27943 3' -51.6 NC_005886.2 + 22336 0.68 0.719813
Target:  5'- -cCGUGACACUCGCGC-CGCA-AUCa -3'
miRNA:   3'- uaGCAUUGUGGGUGCGuGUGUaUGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.