miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27944 5' -58.1 NC_005886.2 + 41891 0.66 0.555706
Target:  5'- cUGcgCCgGAC-GCCGcccCCGCGCCGu -3'
miRNA:   3'- -ACuaGGgCUGaUGGCuucGGCGCGGC- -5'
27944 5' -58.1 NC_005886.2 + 37279 0.66 0.517848
Target:  5'- gGGUgCgGACgUGCCGAcgacgaaguauugcGCCGCGCCa -3'
miRNA:   3'- aCUAgGgCUG-AUGGCUu-------------CGGCGCGGc -5'
27944 5' -58.1 NC_005886.2 + 36426 0.66 0.513702
Target:  5'- ---gCCCGGCcgccGCCGAuGCCGC-CCGu -3'
miRNA:   3'- acuaGGGCUGa---UGGCUuCGGCGcGGC- -5'
27944 5' -58.1 NC_005886.2 + 14619 0.66 0.503399
Target:  5'- cGGUCuCCGACgcgAUC-AAGCCuaGCGCCa -3'
miRNA:   3'- aCUAG-GGCUGa--UGGcUUCGG--CGCGGc -5'
27944 5' -58.1 NC_005886.2 + 44671 0.67 0.48307
Target:  5'- uUGAUCacauCGACaucAUgGAAGuuGCGCCGg -3'
miRNA:   3'- -ACUAGg---GCUGa--UGgCUUCggCGCGGC- -5'
27944 5' -58.1 NC_005886.2 + 16953 0.67 0.473055
Target:  5'- ---aUCCGugUACgGuucGCCGUGCCGa -3'
miRNA:   3'- acuaGGGCugAUGgCuu-CGGCGCGGC- -5'
27944 5' -58.1 NC_005886.2 + 13528 0.67 0.453345
Target:  5'- --cUUCgGACgccgUACCGAAGUaCGCGCCGa -3'
miRNA:   3'- acuAGGgCUG----AUGGCUUCG-GCGCGGC- -5'
27944 5' -58.1 NC_005886.2 + 33970 0.68 0.421833
Target:  5'- gGAUCagguCGGCaucaccgucguaaaUAUCGAAGCgCGCGCCGc -3'
miRNA:   3'- aCUAGg---GCUG--------------AUGGCUUCG-GCGCGGC- -5'
27944 5' -58.1 NC_005886.2 + 36374 0.69 0.353717
Target:  5'- cGAUgCCGccgauGCcGCCGAuGCCGCcGCCGa -3'
miRNA:   3'- aCUAgGGC-----UGaUGGCUuCGGCG-CGGC- -5'
27944 5' -58.1 NC_005886.2 + 1017 0.7 0.329365
Target:  5'- cGGUUCCGAUgu-CGAAGCCGCaacgugcaGCCGu -3'
miRNA:   3'- aCUAGGGCUGaugGCUUCGGCG--------CGGC- -5'
27944 5' -58.1 NC_005886.2 + 13175 0.71 0.29158
Target:  5'- cGAaUCCGGCUAUCGAuGUCGCGCa- -3'
miRNA:   3'- aCUaGGGCUGAUGGCUuCGGCGCGgc -5'
27944 5' -58.1 NC_005886.2 + 17210 0.71 0.270583
Target:  5'- cGAUUCCGACaccGCUGucGCCGCugucGCCGg -3'
miRNA:   3'- aCUAGGGCUGa--UGGCuuCGGCG----CGGC- -5'
27944 5' -58.1 NC_005886.2 + 41251 0.73 0.203377
Target:  5'- uUGAUCggCGuACUACCGAagugaagugcuacAGCCGCGCUGa -3'
miRNA:   3'- -ACUAGg-GC-UGAUGGCU-------------UCGGCGCGGC- -5'
27944 5' -58.1 NC_005886.2 + 44102 0.75 0.140034
Target:  5'- aUGAUgCCGACccCCGucGCUGCGCCGc -3'
miRNA:   3'- -ACUAgGGCUGauGGCuuCGGCGCGGC- -5'
27944 5' -58.1 NC_005886.2 + 34023 1.09 0.000492
Target:  5'- cUGAUCCCGACUACCGAAGCCGCGCCGa -3'
miRNA:   3'- -ACUAGGGCUGAUGGCUUCGGCGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.