miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27947 5' -55.7 NC_005886.2 + 17552 0.66 0.667495
Target:  5'- gUGACGCCgGgUGcAGCACugccgGGCGGuucgACGCAg -3'
miRNA:   3'- -ACUGUGGgC-AC-UUGUG-----UCGCC----UGCGU- -5'
27947 5' -55.7 NC_005886.2 + 33492 0.66 0.667495
Target:  5'- cGuCGCCaCGUuGACGCAGCGaaguuagcguGACGCGu -3'
miRNA:   3'- aCuGUGG-GCAcUUGUGUCGC----------CUGCGU- -5'
27947 5' -55.7 NC_005886.2 + 42098 0.66 0.645324
Target:  5'- cGACAgCCG-GAAuCAUGGCGGGCuGUg -3'
miRNA:   3'- aCUGUgGGCaCUU-GUGUCGCCUG-CGu -5'
27947 5' -55.7 NC_005886.2 + 43753 0.66 0.612002
Target:  5'- --uCGgCCGUGAcgcugGCGCAGCguuGGGCGCGc -3'
miRNA:   3'- acuGUgGGCACU-----UGUGUCG---CCUGCGU- -5'
27947 5' -55.7 NC_005886.2 + 46218 0.69 0.462205
Target:  5'- cGACG-CCGUaGACAUAGCGGACa-- -3'
miRNA:   3'- aCUGUgGGCAcUUGUGUCGCCUGcgu -5'
27947 5' -55.7 NC_005886.2 + 16830 0.7 0.413353
Target:  5'- cGACACCUGUacacggcucGAACGCgcuucuucgAGCGG-CGCAa -3'
miRNA:   3'- aCUGUGGGCA---------CUUGUG---------UCGCCuGCGU- -5'
27947 5' -55.7 NC_005886.2 + 38249 0.73 0.280311
Target:  5'- cUGACGuucaucaauCuuGUGAACagcuACGGCGGACGCGc -3'
miRNA:   3'- -ACUGU---------GggCACUUG----UGUCGCCUGCGU- -5'
27947 5' -55.7 NC_005886.2 + 25831 0.73 0.266299
Target:  5'- cGuCACCCGuUGAACGCAGCcauaGCGCAa -3'
miRNA:   3'- aCuGUGGGC-ACUUGUGUCGcc--UGCGU- -5'
27947 5' -55.7 NC_005886.2 + 20913 0.73 0.259508
Target:  5'- aUGAUGCCgGUcGAu--CAGCGGACGCAu -3'
miRNA:   3'- -ACUGUGGgCA-CUuguGUCGCCUGCGU- -5'
27947 5' -55.7 NC_005886.2 + 30065 0.74 0.239982
Target:  5'- --cCAUCCGU-AACGCAGCGGACGUu -3'
miRNA:   3'- acuGUGGGCAcUUGUGUCGCCUGCGu -5'
27947 5' -55.7 NC_005886.2 + 40739 0.75 0.199177
Target:  5'- -uGCAUCCGUGGAUACccucgcuguucgAGCGGAUGCGg -3'
miRNA:   3'- acUGUGGGCACUUGUG------------UCGCCUGCGU- -5'
27947 5' -55.7 NC_005886.2 + 41311 1.08 0.000831
Target:  5'- cUGACACCCGUGAACACAGCGGACGCAu -3'
miRNA:   3'- -ACUGUGGGCACUUGUGUCGCCUGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.