miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27949 5' -56.6 NC_005886.2 + 22579 0.66 0.612538
Target:  5'- cGCGAGcACaCGCCcgucCGAcUGCCGuGCGa -3'
miRNA:   3'- uCGUUC-UG-GCGGau--GCU-ACGGCuCGC- -5'
27949 5' -56.6 NC_005886.2 + 45591 0.66 0.579509
Target:  5'- --uGAGACCGUCUGCGAucguuuuccagUGCUucGCGg -3'
miRNA:   3'- ucgUUCUGGCGGAUGCU-----------ACGGcuCGC- -5'
27949 5' -56.6 NC_005886.2 + 39324 0.67 0.546875
Target:  5'- -aCGAuACCGCgCUGCGAcaucUGCUGAGUGa -3'
miRNA:   3'- ucGUUcUGGCG-GAUGCU----ACGGCUCGC- -5'
27949 5' -56.6 NC_005886.2 + 36427 0.67 0.536122
Target:  5'- cGCccGGCCGCCgcCGAUGCCGccCGu -3'
miRNA:   3'- uCGuuCUGGCGGauGCUACGGCucGC- -5'
27949 5' -56.6 NC_005886.2 + 29544 0.67 0.514846
Target:  5'- aAGCAcGACCGUUUGuuUGAacccGCCGAGCa -3'
miRNA:   3'- -UCGUuCUGGCGGAU--GCUa---CGGCUCGc -5'
27949 5' -56.6 NC_005886.2 + 26915 0.67 0.504337
Target:  5'- cGCAAGGuuGCCggucGCGuaGUGCCGcccgGGCGc -3'
miRNA:   3'- uCGUUCUggCGGa---UGC--UACGGC----UCGC- -5'
27949 5' -56.6 NC_005886.2 + 38815 0.68 0.473394
Target:  5'- cGCAGuGcCCGCagcgcaGCGGUcGCCGAGCGg -3'
miRNA:   3'- uCGUU-CuGGCGga----UGCUA-CGGCUCGC- -5'
27949 5' -56.6 NC_005886.2 + 29348 0.68 0.454298
Target:  5'- cGUAGGcGuuGCCUACGGUGCCGucaugaccuacguucGCGa -3'
miRNA:   3'- uCGUUC-UggCGGAUGCUACGGCu--------------CGC- -5'
27949 5' -56.6 NC_005886.2 + 15524 0.68 0.453305
Target:  5'- gAGCAacaagGGugCGCCcAUGGUGaugaCGAGCGc -3'
miRNA:   3'- -UCGU-----UCugGCGGaUGCUACg---GCUCGC- -5'
27949 5' -56.6 NC_005886.2 + 45483 0.69 0.433688
Target:  5'- cGGCAaagaAGGCCGgCgauaACGAUGCCGcgaAGCa -3'
miRNA:   3'- -UCGU----UCUGGCgGa---UGCUACGGC---UCGc -5'
27949 5' -56.6 NC_005886.2 + 7162 0.7 0.351936
Target:  5'- uGCGucGAUCGCC-ACGGUGCCGGuGCu -3'
miRNA:   3'- uCGUu-CUGGCGGaUGCUACGGCU-CGc -5'
27949 5' -56.6 NC_005886.2 + 19175 0.71 0.327222
Target:  5'- uGCAAcGGCCGCUUcgAUGAUGCUGAGaCa -3'
miRNA:   3'- uCGUU-CUGGCGGA--UGCUACGGCUC-Gc -5'
27949 5' -56.6 NC_005886.2 + 10453 0.71 0.319275
Target:  5'- cGCuuguuGCCGCgUgACGAUGCCGAGCc -3'
miRNA:   3'- uCGuuc--UGGCGgA-UGCUACGGCUCGc -5'
27949 5' -56.6 NC_005886.2 + 9547 0.71 0.303818
Target:  5'- cGCAAGGCaaagaGCaaGCGGccgGCCGAGCGa -3'
miRNA:   3'- uCGUUCUGg----CGgaUGCUa--CGGCUCGC- -5'
27949 5' -56.6 NC_005886.2 + 21375 0.74 0.190022
Target:  5'- cAGCAaaucauGGAacgCGUCUACGcgGCCGAGCGu -3'
miRNA:   3'- -UCGU------UCUg--GCGGAUGCuaCGGCUCGC- -5'
27949 5' -56.6 NC_005886.2 + 36079 0.75 0.163124
Target:  5'- cGGCAAGACCGCCgACaAUGCuguauccgaucagauCGAGCGa -3'
miRNA:   3'- -UCGUUCUGGCGGaUGcUACG---------------GCUCGC- -5'
27949 5' -56.6 NC_005886.2 + 42062 1.09 0.000546
Target:  5'- cAGCAAGACCGCCUACGAUGCCGAGCGg -3'
miRNA:   3'- -UCGUUCUGGCGGAUGCUACGGCUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.