miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27953 5' -62.5 NC_005886.2 + 1075 0.66 0.313297
Target:  5'- aCGCCCAUGCagGCCGuccacuuacCGCCCGUa -3'
miRNA:   3'- -GCGGGUACGgaCGGCcac------GCGGGUAc -5'
27953 5' -62.5 NC_005886.2 + 35611 0.66 0.284335
Target:  5'- gGCCCAUGCgUccaaguauucGCCGcGUGCGCUa--- -3'
miRNA:   3'- gCGGGUACGgA----------CGGC-CACGCGGguac -5'
27953 5' -62.5 NC_005886.2 + 32090 0.69 0.18162
Target:  5'- uCGCCCGUGCUgcgaaucuagaUGCCgacguucgcuacaucGGUGCGCCgAa- -3'
miRNA:   3'- -GCGGGUACGG-----------ACGG---------------CCACGCGGgUac -5'
27953 5' -62.5 NC_005886.2 + 36428 0.7 0.170477
Target:  5'- cCGCCCG-GCCgccGCCGaUGCcGCCCGUa -3'
miRNA:   3'- -GCGGGUaCGGa--CGGCcACG-CGGGUAc -5'
27953 5' -62.5 NC_005886.2 + 16184 0.7 0.164262
Target:  5'- gCGCCCuuguauuguaccGCCUGCCGGguuacGCGCCgGUc -3'
miRNA:   3'- -GCGGGua----------CGGACGGCCa----CGCGGgUAc -5'
27953 5' -62.5 NC_005886.2 + 36240 0.71 0.12689
Target:  5'- cCGCCCGUGCC-GCCGcGUGggaaaaauuCGaCCCGUGc -3'
miRNA:   3'- -GCGGGUACGGaCGGC-CAC---------GC-GGGUAC- -5'
27953 5' -62.5 NC_005886.2 + 36348 0.74 0.077211
Target:  5'- cCGCCgAUGCC-GCCcGUGcCGCCCGUGc -3'
miRNA:   3'- -GCGGgUACGGaCGGcCAC-GCGGGUAC- -5'
27953 5' -62.5 NC_005886.2 + 36396 0.74 0.077211
Target:  5'- cCGCCCGUGCC-GCCcGUGCcGCCgAUGc -3'
miRNA:   3'- -GCGGGUACGGaCGGcCACG-CGGgUAC- -5'
27953 5' -62.5 NC_005886.2 + 36282 0.8 0.026234
Target:  5'- cCGCCCGUGCCgccGCCGaUGcCGCCCGUGc -3'
miRNA:   3'- -GCGGGUACGGa--CGGCcAC-GCGGGUAC- -5'
27953 5' -62.5 NC_005886.2 + 36312 0.8 0.026234
Target:  5'- cCGCCCGUGCCgccGCCGaUGcCGCCCGUGc -3'
miRNA:   3'- -GCGGGUACGGa--CGGCcAC-GCGGGUAC- -5'
27953 5' -62.5 NC_005886.2 + 43913 1.07 0.000218
Target:  5'- gCGCCCAUGCCUGCCGGUGCGCCCAUGc -3'
miRNA:   3'- -GCGGGUACGGACGGCCACGCGGGUAC- -5'
27953 5' -62.5 NC_005886.2 + 43949 1.07 0.000218
Target:  5'- gCGCCCAUGCCUGCCGGUGCGCCCAUGc -3'
miRNA:   3'- -GCGGGUACGGACGGCCACGCGGGUAC- -5'
27953 5' -62.5 NC_005886.2 + 43985 1.07 0.000218
Target:  5'- gCGCCCAUGCCUGCCGGUGCGCCCAUGc -3'
miRNA:   3'- -GCGGGUACGGACGGCCACGCGGGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.