miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27959 3' -54.2 NC_005886.2 + 39662 0.66 0.767778
Target:  5'- cGGGuUCGCggCGAaaucaaacauuuGG-ACGgGCCGCCCg -3'
miRNA:   3'- -UCU-AGCGuaGCU------------CCuUGUgUGGCGGG- -5'
27959 3' -54.2 NC_005886.2 + 32000 0.66 0.767778
Target:  5'- cGGAUCGCAaCGcGcGcauuacgcAAUACACCGCCg -3'
miRNA:   3'- -UCUAGCGUaGCuC-C--------UUGUGUGGCGGg -5'
27959 3' -54.2 NC_005886.2 + 3916 0.66 0.767778
Target:  5'- cGAUCGCGguaUCGucGGGCGuuguacCAUUGCCCg -3'
miRNA:   3'- uCUAGCGU---AGCucCUUGU------GUGGCGGG- -5'
27959 3' -54.2 NC_005886.2 + 20605 0.66 0.713799
Target:  5'- cGGcgCgGCAuUCGAGGAuugaucuAUGC-CCGCCCg -3'
miRNA:   3'- -UCuaG-CGU-AGCUCCU-------UGUGuGGCGGG- -5'
27959 3' -54.2 NC_005886.2 + 15056 0.67 0.702914
Target:  5'- uGAUCGCG-CGGGGAugcCGCGCgauggugCGCCg -3'
miRNA:   3'- uCUAGCGUaGCUCCUu--GUGUG-------GCGGg -5'
27959 3' -54.2 NC_005886.2 + 32659 0.67 0.68976
Target:  5'- cGGUUGCGUCGcucguuacggucacAGuGAACAcCGCCGCgCg -3'
miRNA:   3'- uCUAGCGUAGC--------------UC-CUUGU-GUGGCGgG- -5'
27959 3' -54.2 NC_005886.2 + 755 0.67 0.682047
Target:  5'- uGAUCGCGUCGGagcGGGAUACcCCGaCa -3'
miRNA:   3'- uCUAGCGUAGCU---CCUUGUGuGGCgGg -5'
27959 3' -54.2 NC_005886.2 + 14551 0.68 0.648771
Target:  5'- cGA-CGCGUaCGAGGcgaugAACACGCCGUUUg -3'
miRNA:   3'- uCUaGCGUA-GCUCC-----UUGUGUGGCGGG- -5'
27959 3' -54.2 NC_005886.2 + 40282 0.68 0.615351
Target:  5'- cGGUCGaCAUCGAGcaugcGACGCGCauuugugaaGCCCu -3'
miRNA:   3'- uCUAGC-GUAGCUCc----UUGUGUGg--------CGGG- -5'
27959 3' -54.2 NC_005886.2 + 36572 0.68 0.614238
Target:  5'- cGGGUCGU-UCGAaggaaucGGAGCGCAUCGCg- -3'
miRNA:   3'- -UCUAGCGuAGCU-------CCUUGUGUGGCGgg -5'
27959 3' -54.2 NC_005886.2 + 33820 0.68 0.607563
Target:  5'- uAGAcgCGCAUCGuaacacccacgcacACAUACCGCCCg -3'
miRNA:   3'- -UCUa-GCGUAGCuccu----------UGUGUGGCGGG- -5'
27959 3' -54.2 NC_005886.2 + 26823 0.69 0.59313
Target:  5'- uGAUCGCGgcguUCGucGAACGCAUcaCGCCa -3'
miRNA:   3'- uCUAGCGU----AGCucCUUGUGUG--GCGGg -5'
27959 3' -54.2 NC_005886.2 + 23256 0.69 0.571043
Target:  5'- ---cCGCGuaguUCGGGGAAacCAUGCCGUCCg -3'
miRNA:   3'- ucuaGCGU----AGCUCCUU--GUGUGGCGGG- -5'
27959 3' -54.2 NC_005886.2 + 15913 0.73 0.367224
Target:  5'- cAGGUCGaCAUCGAacgugccguugcGGAACACAcgucggagcgcgauCCGUCCg -3'
miRNA:   3'- -UCUAGC-GUAGCU------------CCUUGUGU--------------GGCGGG- -5'
27959 3' -54.2 NC_005886.2 + 15325 0.73 0.34407
Target:  5'- cGAUCGCAUCGAcaGGAGCGCccacagcauuugACCGUa- -3'
miRNA:   3'- uCUAGCGUAGCU--CCUUGUG------------UGGCGgg -5'
27959 3' -54.2 NC_005886.2 + 43135 0.75 0.281759
Target:  5'- uGcgCGCGUCGAcgaaGAGCGCGCCGCgCg -3'
miRNA:   3'- uCuaGCGUAGCUc---CUUGUGUGGCGgG- -5'
27959 3' -54.2 NC_005886.2 + 45283 0.78 0.174571
Target:  5'- uGAUCGCAUCGGGGAugACGau-CCCg -3'
miRNA:   3'- uCUAGCGUAGCUCCUugUGUggcGGG- -5'
27959 3' -54.2 NC_005886.2 + 6002 1.13 0.000626
Target:  5'- cAGAUCGCAUCGAGGAACACACCGCCCg -3'
miRNA:   3'- -UCUAGCGUAGCUCCUUGUGUGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.