miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27977 5' -52.3 NC_005886.2 + 46955 0.66 0.800219
Target:  5'- gAUGCGAucauucgcauuGCCGAucuGGCCGGC-GCGc-- -3'
miRNA:   3'- aUGCGCU-----------UGGCU---UCGGCCGuUGUuuu -5'
27977 5' -52.3 NC_005886.2 + 17377 0.66 0.800219
Target:  5'- -uCGuCGGGCCGA--UCGGCAGCGGAc -3'
miRNA:   3'- auGC-GCUUGGCUucGGCCGUUGUUUu -5'
27977 5' -52.3 NC_005886.2 + 3443 0.66 0.800219
Target:  5'- -gUGCagGAACCGGcacgauuGCCGGCAACGu-- -3'
miRNA:   3'- auGCG--CUUGGCUu------CGGCCGUUGUuuu -5'
27977 5' -52.3 NC_005886.2 + 11705 0.66 0.797169
Target:  5'- gACGCGuACCuacguuaucuccaaGuuGCCGGCGACGGu- -3'
miRNA:   3'- aUGCGCuUGG--------------CuuCGGCCGUUGUUuu -5'
27977 5' -52.3 NC_005886.2 + 4703 0.66 0.779573
Target:  5'- aGCGUcaAGCCGAcGCCGGCuuguGACGAAc -3'
miRNA:   3'- aUGCGc-UUGGCUuCGGCCG----UUGUUUu -5'
27977 5' -52.3 NC_005886.2 + 39437 0.66 0.76899
Target:  5'- cUugGUGcAACgGAAGCCGcgaguugcGCGACAAGAu -3'
miRNA:   3'- -AugCGC-UUGgCUUCGGC--------CGUUGUUUU- -5'
27977 5' -52.3 NC_005886.2 + 36694 0.66 0.76899
Target:  5'- cAUGCGGAuucuuuaguuCCGAcGCCGcGCGACAGu- -3'
miRNA:   3'- aUGCGCUU----------GGCUuCGGC-CGUUGUUuu -5'
27977 5' -52.3 NC_005886.2 + 46323 0.66 0.76899
Target:  5'- aUGCGgGAACCgcGAAGucuuCCGGCAACu--- -3'
miRNA:   3'- -AUGCgCUUGG--CUUC----GGCCGUUGuuuu -5'
27977 5' -52.3 NC_005886.2 + 16957 0.67 0.747366
Target:  5'- gACGCGuACCguuguucgcuucGAGGCCGGUuuGCAAGu -3'
miRNA:   3'- aUGCGCuUGG------------CUUCGGCCGu-UGUUUu -5'
27977 5' -52.3 NC_005886.2 + 41753 0.67 0.736354
Target:  5'- aUGCGCGGAaccauUCGAGGCCuGcCGGCAGAc -3'
miRNA:   3'- -AUGCGCUU-----GGCUUCGGcC-GUUGUUUu -5'
27977 5' -52.3 NC_005886.2 + 21826 0.67 0.736354
Target:  5'- cGCGCGAugCGAugcGCaagGGCuACAAGAu -3'
miRNA:   3'- aUGCGCUugGCUu--CGg--CCGuUGUUUU- -5'
27977 5' -52.3 NC_005886.2 + 31036 0.68 0.679815
Target:  5'- gGCGUucGGCUGAAGaCGGCAGCGGAGg -3'
miRNA:   3'- aUGCGc-UUGGCUUCgGCCGUUGUUUU- -5'
27977 5' -52.3 NC_005886.2 + 662 0.68 0.656756
Target:  5'- aUACGCGccaaucgcAACC-AAGCCGGCcGCAAc- -3'
miRNA:   3'- -AUGCGC--------UUGGcUUCGGCCGuUGUUuu -5'
27977 5' -52.3 NC_005886.2 + 25012 0.69 0.622007
Target:  5'- aUGCGCGcuUCGAucaacGCCGGCAGgAAAAu -3'
miRNA:   3'- -AUGCGCuuGGCUu----CGGCCGUUgUUUU- -5'
27977 5' -52.3 NC_005886.2 + 44508 0.69 0.622007
Target:  5'- gACGU--GCUGAAGCCGuGCAACGu-- -3'
miRNA:   3'- aUGCGcuUGGCUUCGGC-CGUUGUuuu -5'
27977 5' -52.3 NC_005886.2 + 34647 0.69 0.622007
Target:  5'- cGCGCGGAaCGAucGCaCGGCAACAu-- -3'
miRNA:   3'- aUGCGCUUgGCUu-CG-GCCGUUGUuuu -5'
27977 5' -52.3 NC_005886.2 + 45451 0.69 0.610429
Target:  5'- aACGCGGAUUGAagcgaagcacaaAGCCGcaGCGGCAAAGa -3'
miRNA:   3'- aUGCGCUUGGCU------------UCGGC--CGUUGUUUU- -5'
27977 5' -52.3 NC_005886.2 + 17118 0.69 0.57586
Target:  5'- -cCGgGAAUCGAGaCCGGCGACAGc- -3'
miRNA:   3'- auGCgCUUGGCUUcGGCCGUUGUUuu -5'
27977 5' -52.3 NC_005886.2 + 2220 0.69 0.57586
Target:  5'- aGCGC-AACCac-GCCGGCAACAAc- -3'
miRNA:   3'- aUGCGcUUGGcuuCGGCCGUUGUUuu -5'
27977 5' -52.3 NC_005886.2 + 35991 0.7 0.553055
Target:  5'- gGCGUGucauuGCCGAAGUCGGCGGu---- -3'
miRNA:   3'- aUGCGCu----UGGCUUCGGCCGUUguuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.