miRNA display CGI


Results 1 - 20 of 25 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2799 3' -53.9 NC_001491.2 + 4905 0.66 0.964558
Target:  5'- uGUGC--GACCACCAGCggcugUCUgACGUCGc -3'
miRNA:   3'- cCACGagUUGGUGGUCG-----AGG-UGUAGC- -5'
2799 3' -53.9 NC_001491.2 + 5262 0.66 0.953516
Target:  5'- cGGUGCUCGGCUucggaucggACCAGUuuaaUCCGgAggCGa -3'
miRNA:   3'- -CCACGAGUUGG---------UGGUCG----AGGUgUa-GC- -5'
2799 3' -53.9 NC_001491.2 + 34490 0.66 0.953112
Target:  5'- cGUGCUCGGCCACgCGcGC-CCuggcccgggacgaACGUCGu -3'
miRNA:   3'- cCACGAGUUGGUG-GU-CGaGG-------------UGUAGC- -5'
2799 3' -53.9 NC_001491.2 + 147786 0.66 0.944987
Target:  5'- cGGgccGCU-GGCCGCCAGCUCCcCGa-- -3'
miRNA:   3'- -CCa--CGAgUUGGUGGUCGAGGuGUagc -5'
2799 3' -53.9 NC_001491.2 + 117041 0.67 0.940362
Target:  5'- --gGC-CAACCcCCuGCcCCACAUCGg -3'
miRNA:   3'- ccaCGaGUUGGuGGuCGaGGUGUAGC- -5'
2799 3' -53.9 NC_001491.2 + 124879 0.67 0.919411
Target:  5'- aGGUGCUCAGCUACUccGCccugCCGCugcccaagAUCGa -3'
miRNA:   3'- -CCACGAGUUGGUGGu-CGa---GGUG--------UAGC- -5'
2799 3' -53.9 NC_001491.2 + 147644 0.68 0.913559
Target:  5'- --aGCUCcGCCACCAGCUCgGgGg-- -3'
miRNA:   3'- ccaCGAGuUGGUGGUCGAGgUgUagc -5'
2799 3' -53.9 NC_001491.2 + 58422 0.68 0.913559
Target:  5'- --cGCUgCAGCaccucugggcaGCCGGCUCUACAUCu -3'
miRNA:   3'- ccaCGA-GUUGg----------UGGUCGAGGUGUAGc -5'
2799 3' -53.9 NC_001491.2 + 19181 0.68 0.907463
Target:  5'- uGGUGgaUGAgCgugACCAGCUCCACggCGg -3'
miRNA:   3'- -CCACgaGUUgG---UGGUCGAGGUGuaGC- -5'
2799 3' -53.9 NC_001491.2 + 53917 0.68 0.901124
Target:  5'- --aGUUC-GCCACCGGCUacaACAUCGu -3'
miRNA:   3'- ccaCGAGuUGGUGGUCGAgg-UGUAGC- -5'
2799 3' -53.9 NC_001491.2 + 127823 0.68 0.901124
Target:  5'- gGGUGUUUggugGGCUGCCAGUUCUGCGggguUCGg -3'
miRNA:   3'- -CCACGAG----UUGGUGGUCGAGGUGU----AGC- -5'
2799 3' -53.9 NC_001491.2 + 101674 0.68 0.901124
Target:  5'- aGGUGC---ACCGCCAGCguggCCAuCAUgGa -3'
miRNA:   3'- -CCACGaguUGGUGGUCGa---GGU-GUAgC- -5'
2799 3' -53.9 NC_001491.2 + 50885 0.68 0.901124
Target:  5'- uGGUGCUUcgucucuuGGCgGCCGa-UCCACAUCGa -3'
miRNA:   3'- -CCACGAG--------UUGgUGGUcgAGGUGUAGC- -5'
2799 3' -53.9 NC_001491.2 + 66069 0.68 0.890486
Target:  5'- cGGUGCcuucUCAguauauACCGCCGGCUuacaauucccugaugCCAcCAUCGa -3'
miRNA:   3'- -CCACG----AGU------UGGUGGUCGA---------------GGU-GUAGC- -5'
2799 3' -53.9 NC_001491.2 + 72635 0.69 0.861313
Target:  5'- cGGUGCUCGuaCAUCGGUuugcgcaauucggccUCCACGUUGa -3'
miRNA:   3'- -CCACGAGUugGUGGUCG---------------AGGUGUAGC- -5'
2799 3' -53.9 NC_001491.2 + 118240 0.69 0.850279
Target:  5'- cGGUcGCcgGGCCACgGGCUCCuCAUCa -3'
miRNA:   3'- -CCA-CGagUUGGUGgUCGAGGuGUAGc -5'
2799 3' -53.9 NC_001491.2 + 78522 0.7 0.833829
Target:  5'- --aGCUCAgccaggcgggcuACCACCAGCUCCuu-UCu -3'
miRNA:   3'- ccaCGAGU------------UGGUGGUCGAGGuguAGc -5'
2799 3' -53.9 NC_001491.2 + 65880 0.7 0.833829
Target:  5'- aGUGCUC-ACCGCCucuGuCUCCGCAgcaagagCGg -3'
miRNA:   3'- cCACGAGuUGGUGGu--C-GAGGUGUa------GC- -5'
2799 3' -53.9 NC_001491.2 + 45730 0.7 0.807757
Target:  5'- uGGUGCUCGugCAUCAGaacggCCGCuugaggggucGUCGg -3'
miRNA:   3'- -CCACGAGUugGUGGUCga---GGUG----------UAGC- -5'
2799 3' -53.9 NC_001491.2 + 146250 0.7 0.807757
Target:  5'- cGGcgGCUCAugGCCACCAgGCggCCGCGUg- -3'
miRNA:   3'- -CCa-CGAGU--UGGUGGU-CGa-GGUGUAgc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.