miRNA display CGI


Results 1 - 20 of 20 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27994 5' -62.2 NC_005886.2 + 43842 0.66 0.358303
Target:  5'- cGUCGACUgcugcgcgCCCaaCGCUGCGCCaGCGucACg -3'
miRNA:   3'- -CGGCUGG--------GGGcaGCGACGCGG-CGU--UG- -5'
27994 5' -62.2 NC_005886.2 + 1170 0.66 0.358303
Target:  5'- gGCCGaaGCCCCCGcCGCcacgaGCGCaaGCAc- -3'
miRNA:   3'- -CGGC--UGGGGGCaGCGa----CGCGg-CGUug -5'
27994 5' -62.2 NC_005886.2 + 19560 0.66 0.350161
Target:  5'- uCCGGCCgCUGgCGUUGUguacGUCGCAGCg -3'
miRNA:   3'- cGGCUGGgGGCaGCGACG----CGGCGUUG- -5'
27994 5' -62.2 NC_005886.2 + 42454 0.66 0.350161
Target:  5'- cGCCGcACUCCgGguggaugCGCgGUGCgGCAACc -3'
miRNA:   3'- -CGGC-UGGGGgCa------GCGaCGCGgCGUUG- -5'
27994 5' -62.2 NC_005886.2 + 13450 0.66 0.350161
Target:  5'- aGCCGccGCgCUCGcaaCGCUGCaaGCCGUGACg -3'
miRNA:   3'- -CGGC--UGgGGGCa--GCGACG--CGGCGUUG- -5'
27994 5' -62.2 NC_005886.2 + 45546 0.66 0.342151
Target:  5'- cGCCGGCCUUCuUUGC--CGCUGCGGCu -3'
miRNA:   3'- -CGGCUGGGGGcAGCGacGCGGCGUUG- -5'
27994 5' -62.2 NC_005886.2 + 29797 0.66 0.333495
Target:  5'- gGCCGGCCCuuGcgcuucggccccuUUGCUGCgaGUCGCGc- -3'
miRNA:   3'- -CGGCUGGGggC-------------AGCGACG--CGGCGUug -5'
27994 5' -62.2 NC_005886.2 + 16754 0.67 0.304106
Target:  5'- uGCCGGCgUaCGUCGCaGUGCCG-AACg -3'
miRNA:   3'- -CGGCUGgGgGCAGCGaCGCGGCgUUG- -5'
27994 5' -62.2 NC_005886.2 + 38735 0.67 0.296185
Target:  5'- cGCCGACggacgaggugauuCUCaaCGUCGCccGCGCCGCAu- -3'
miRNA:   3'- -CGGCUG-------------GGG--GCAGCGa-CGCGGCGUug -5'
27994 5' -62.2 NC_005886.2 + 47242 0.67 0.289825
Target:  5'- uGCCGACCguucgguuuUCCGU-GUUGUGCaGCGACa -3'
miRNA:   3'- -CGGCUGG---------GGGCAgCGACGCGgCGUUG- -5'
27994 5' -62.2 NC_005886.2 + 44206 0.67 0.289125
Target:  5'- aGCCGGCCgCUuucugCGUCggcacgaGUUGCGgCGCAGCg -3'
miRNA:   3'- -CGGCUGG-GG-----GCAG-------CGACGCgGCGUUG- -5'
27994 5' -62.2 NC_005886.2 + 5542 0.67 0.282883
Target:  5'- cGUCGAUuaCCaCCGUCGC-GC-CCGUAACg -3'
miRNA:   3'- -CGGCUG--GG-GGCAGCGaCGcGGCGUUG- -5'
27994 5' -62.2 NC_005886.2 + 13301 0.68 0.269397
Target:  5'- cGCCGAaaacgaaaUgCCCGauaccgugacagUCGUUGCGCCGCcgAACa -3'
miRNA:   3'- -CGGCU--------GgGGGC------------AGCGACGCGGCG--UUG- -5'
27994 5' -62.2 NC_005886.2 + 22344 0.68 0.256433
Target:  5'- -gCGACCgCCCGUgaCaCUcGCGCCGCAAUc -3'
miRNA:   3'- cgGCUGG-GGGCA--GcGA-CGCGGCGUUG- -5'
27994 5' -62.2 NC_005886.2 + 24687 0.68 0.256433
Target:  5'- gGCCGcuagaaGCCCCgCGUcCGC-GCGCaaCGCGGCg -3'
miRNA:   3'- -CGGC------UGGGG-GCA-GCGaCGCG--GCGUUG- -5'
27994 5' -62.2 NC_005886.2 + 36299 0.69 0.22626
Target:  5'- cGCCGauGCCgCCCGUgcCGCccGUGCCGCcGCc -3'
miRNA:   3'- -CGGC--UGG-GGGCA--GCGa-CGCGGCGuUG- -5'
27994 5' -62.2 NC_005886.2 + 36347 0.69 0.22626
Target:  5'- cGCCGauGCCgCCCGUgcCGCccGUGCCGCcGCc -3'
miRNA:   3'- -CGGC--UGG-GGGCA--GCGa-CGCGGCGuUG- -5'
27994 5' -62.2 NC_005886.2 + 41861 0.69 0.220598
Target:  5'- cGCCGACUcaaCCCGUCauggucgcaauGcCUGCGCCG-GACg -3'
miRNA:   3'- -CGGCUGG---GGGCAG-----------C-GACGCGGCgUUG- -5'
27994 5' -62.2 NC_005886.2 + 39016 0.69 0.204335
Target:  5'- cGCUGcauCCCCUGUCGagcaGC-CCGCAGCa -3'
miRNA:   3'- -CGGCu--GGGGGCAGCga--CGcGGCGUUG- -5'
27994 5' -62.2 NC_005886.2 + 44106 1.1 0.00016
Target:  5'- uGCCGACCCCCGUCGCUGCGCCGCAACu -3'
miRNA:   3'- -CGGCUGGGGGCAGCGACGCGGCGUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.