Results 61 - 79 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27996 | 5' | -56.7 | NC_005887.1 | + | 33708 | 0.69 | 0.372023 |
Target: 5'- uUCGuGGCGCgGC-GGUCGAucugcucgaucGCGGCGa -3' miRNA: 3'- -AGCuCCGCGgCGuCCAGUU-----------UGUCGUg -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 40731 | 0.67 | 0.457819 |
Target: 5'- uUCGAGGuCGCCGCccgcGUCGAGgcgaucgccguUGGCGCg -3' miRNA: 3'- -AGCUCC-GCGGCGuc--CAGUUU-----------GUCGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 25127 | 0.67 | 0.457819 |
Target: 5'- cCGAGauccaGCGCCGCagcugcAGGUCGucgAGCACa -3' miRNA: 3'- aGCUC-----CGCGGCG------UCCAGUuugUCGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 9282 | 0.67 | 0.457819 |
Target: 5'- gUCGGcacGGCgacGCCGCAGGUUAcg-GGCACc -3' miRNA: 3'- -AGCU---CCG---CGGCGUCCAGUuugUCGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 24378 | 0.67 | 0.44776 |
Target: 5'- aCGAGccGCGCUGCAGGUCGAuCAa--- -3' miRNA: 3'- aGCUC--CGCGGCGUCCAGUUuGUcgug -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 2183 | 0.68 | 0.437825 |
Target: 5'- cUGAcGCcgGCCGCGGuGaUCGGGCAGCGCa -3' miRNA: 3'- aGCUcCG--CGGCGUC-C-AGUUUGUCGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 21865 | 0.68 | 0.437825 |
Target: 5'- aCGAcuGGCGCacaGCAGcUCAu-CAGCACg -3' miRNA: 3'- aGCU--CCGCGg--CGUCcAGUuuGUCGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 35462 | 0.68 | 0.428017 |
Target: 5'- cCGAGGCGuUCGUu-GUCGAGCAGguCg -3' miRNA: 3'- aGCUCCGC-GGCGucCAGUUUGUCguG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 28053 | 0.68 | 0.428017 |
Target: 5'- aUCGAgcaGGCGCUGCGccacccauguucGGUCAcGCuGCAUg -3' miRNA: 3'- -AGCU---CCGCGGCGU------------CCAGUuUGuCGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 13629 | 0.68 | 0.428017 |
Target: 5'- gCGcGGCgGCCGCAcucaGcCGAGCAGCACc -3' miRNA: 3'- aGCuCCG-CGGCGUc---CaGUUUGUCGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 2637 | 0.68 | 0.418341 |
Target: 5'- cCGAGGCgagucaguaccuGCUGguGGgcgCGGGCgAGCACa -3' miRNA: 3'- aGCUCCG------------CGGCguCCa--GUUUG-UCGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 26205 | 0.68 | 0.418341 |
Target: 5'- aCGGGGCGgCGguGGcCGGccuGCAGCugGCg -3' miRNA: 3'- aGCUCCGCgGCguCCaGUU---UGUCG--UG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 31210 | 0.68 | 0.408799 |
Target: 5'- uUCG-GGCGCCGCGuG-Cuu-CAGCACg -3' miRNA: 3'- -AGCuCCGCGGCGUcCaGuuuGUCGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 10202 | 0.68 | 0.399393 |
Target: 5'- gUCGAGuGCGUCGCGucgaugcccGcGcCGGACGGCGCg -3' miRNA: 3'- -AGCUC-CGCGGCGU---------C-CaGUUUGUCGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 9884 | 0.68 | 0.399393 |
Target: 5'- uUCGAaaaGGauccaGCCgguGCAGGUCG-GCGGCACg -3' miRNA: 3'- -AGCU---CCg----CGG---CGUCCAGUuUGUCGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 10563 | 0.68 | 0.390128 |
Target: 5'- aCGccGGCGCCGCAaacGG---GACAGCGCa -3' miRNA: 3'- aGCu-CCGCGGCGU---CCaguUUGUCGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 29719 | 0.69 | 0.381004 |
Target: 5'- cCGucGCGUCGCAGGaUCAcGCGccGCGCg -3' miRNA: 3'- aGCucCGCGGCGUCC-AGUuUGU--CGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 19722 | 0.69 | 0.381004 |
Target: 5'- -aGGGGUGUCGCGgaucuGGUgCAuuGGCGGCACg -3' miRNA: 3'- agCUCCGCGGCGU-----CCA-GU--UUGUCGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 32837 | 0.78 | 0.093586 |
Target: 5'- gUGAuGGcCGCCguGCAGGUCAAGCGGCAUc -3' miRNA: 3'- aGCU-CC-GCGG--CGUCCAGUUUGUCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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