Results 41 - 60 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27996 | 5' | -56.7 | NC_005887.1 | + | 7217 | 0.67 | 0.488695 |
Target: 5'- gCGcAGGCGCUGuCGGcGUCGGGC-GCAUc -3' miRNA: 3'- aGC-UCCGCGGC-GUC-CAGUUUGuCGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 20121 | 0.67 | 0.48244 |
Target: 5'- uUCGAGGCguacaacuacuaucaGCUGUGGGaugcgcaaacgUCAAGCGGCGg -3' miRNA: 3'- -AGCUCCG---------------CGGCGUCC-----------AGUUUGUCGUg -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 5822 | 0.67 | 0.478291 |
Target: 5'- aUCGAGuCGgCGCGGGUCGcgAAgGGCGa -3' miRNA: 3'- -AGCUCcGCgGCGUCCAGU--UUgUCGUg -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 15821 | 0.69 | 0.372023 |
Target: 5'- aCGAGGCGCagguGCAGcGcUUgcGCGGCGCg -3' miRNA: 3'- aGCUCCGCGg---CGUC-C-AGuuUGUCGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 33708 | 0.69 | 0.372023 |
Target: 5'- uUCGuGGCGCgGC-GGUCGAucugcucgaucGCGGCGa -3' miRNA: 3'- -AGCuCCGCGgCGuCCAGUU-----------UGUCGUg -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 19722 | 0.69 | 0.381004 |
Target: 5'- -aGGGGUGUCGCGgaucuGGUgCAuuGGCGGCACg -3' miRNA: 3'- agCUCCGCGGCGU-----CCA-GU--UUGUCGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 10563 | 0.68 | 0.390128 |
Target: 5'- aCGccGGCGCCGCAaacGG---GACAGCGCa -3' miRNA: 3'- aGCu-CCGCGGCGU---CCaguUUGUCGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 9884 | 0.68 | 0.399393 |
Target: 5'- uUCGAaaaGGauccaGCCgguGCAGGUCG-GCGGCACg -3' miRNA: 3'- -AGCU---CCg----CGG---CGUCCAGUuUGUCGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 10202 | 0.68 | 0.399393 |
Target: 5'- gUCGAGuGCGUCGCGucgaugcccGcGcCGGACGGCGCg -3' miRNA: 3'- -AGCUC-CGCGGCGU---------C-CaGUUUGUCGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 31210 | 0.68 | 0.408799 |
Target: 5'- uUCG-GGCGCCGCGuG-Cuu-CAGCACg -3' miRNA: 3'- -AGCuCCGCGGCGUcCaGuuuGUCGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 26205 | 0.68 | 0.418341 |
Target: 5'- aCGGGGCGgCGguGGcCGGccuGCAGCugGCg -3' miRNA: 3'- aGCUCCGCgGCguCCaGUU---UGUCG--UG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 2637 | 0.68 | 0.418341 |
Target: 5'- cCGAGGCgagucaguaccuGCUGguGGgcgCGGGCgAGCACa -3' miRNA: 3'- aGCUCCG------------CGGCguCCa--GUUUG-UCGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 24602 | 0.7 | 0.321229 |
Target: 5'- uUCGcGGCgaugaucuugcgGCCGCAcgcguGGUCGAACAGCuGCg -3' miRNA: 3'- -AGCuCCG------------CGGCGU-----CCAGUUUGUCG-UG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 11797 | 0.7 | 0.315652 |
Target: 5'- cUCGGcGGCGUCgguucguacgcuaagGCAGGcggcggccuguucUCGAGCAGCACg -3' miRNA: 3'- -AGCU-CCGCGG---------------CGUCC-------------AGUUUGUCGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 11130 | 0.7 | 0.305491 |
Target: 5'- cCGAGGCGCCGU------GGCGGCGCa -3' miRNA: 3'- aGCUCCGCGGCGuccaguUUGUCGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 32290 | 0.7 | 0.297846 |
Target: 5'- aCGGGGCGaUCGuCGGGcCAGcCGGCGCg -3' miRNA: 3'- aGCUCCGC-GGC-GUCCaGUUuGUCGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 4624 | 0.71 | 0.29035 |
Target: 5'- cCGcGGCGCCGguGGcCGc-CGGCGCg -3' miRNA: 3'- aGCuCCGCGGCguCCaGUuuGUCGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 29719 | 0.69 | 0.381004 |
Target: 5'- cCGucGCGUCGCAGGaUCAcGCGccGCGCg -3' miRNA: 3'- aGCucCGCGGCGUCC-AGUuUGU--CGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 8121 | 0.71 | 0.283003 |
Target: 5'- cCGAGGCGCCGCuguucGGGUU---CAGCu- -3' miRNA: 3'- aGCUCCGCGGCG-----UCCAGuuuGUCGug -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 41541 | 0.67 | 0.457819 |
Target: 5'- gCGAGGCGCucggcgcgcaCGCGaaGUCAGcCAGCGCc -3' miRNA: 3'- aGCUCCGCG----------GCGUc-CAGUUuGUCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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