miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27996 5' -56.7 NC_005887.1 + 6479 0.68 0.437825
Target:  5'- gCGcGGCGUCGCGGuGUCu-GCcgAGCGCa -3'
miRNA:   3'- aGCuCCGCGGCGUC-CAGuuUG--UCGUG- -5'
27996 5' -56.7 NC_005887.1 + 37205 0.71 0.261847
Target:  5'- gCGGcGCGCCGac-GUCGGGCAGCGCg -3'
miRNA:   3'- aGCUcCGCGGCgucCAGUUUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 28140 0.7 0.305491
Target:  5'- gCGcGGCGCCGCccuguccgAGGcCGcgcccGACAGCGCg -3'
miRNA:   3'- aGCuCCGCGGCG--------UCCaGU-----UUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 1762 0.67 0.457819
Target:  5'- gUCGAGGaaCCGCGGGUUGuacuuGCucgAGCGCg -3'
miRNA:   3'- -AGCUCCgcGGCGUCCAGUu----UG---UCGUG- -5'
27996 5' -56.7 NC_005887.1 + 27398 0.67 0.478291
Target:  5'- gUCGAGuuGCgGCGcGUCGuacGGCAGCGCg -3'
miRNA:   3'- -AGCUCcgCGgCGUcCAGU---UUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 39902 0.73 0.217495
Target:  5'- gUCGAcGGCGCCGUAGcgcgcgagguGUCAuucguCGGCGCg -3'
miRNA:   3'- -AGCU-CCGCGGCGUC----------CAGUuu---GUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 25264 0.71 0.255087
Target:  5'- gUCGAGGUaUUGCGagcGGUCGAGCAGCGg -3'
miRNA:   3'- -AGCUCCGcGGCGU---CCAGUUUGUCGUg -5'
27996 5' -56.7 NC_005887.1 + 23334 0.67 0.503435
Target:  5'- uUCGAagaggugacagucauGGCGCgGCcuuuGGUUAGACuGCGCc -3'
miRNA:   3'- -AGCU---------------CCGCGgCGu---CCAGUUUGuCGUG- -5'
27996 5' -56.7 NC_005887.1 + 28103 0.75 0.15382
Target:  5'- cCGGGGCGUgcgugacggucugguUGguGGUCAAgaACAGCGCg -3'
miRNA:   3'- aGCUCCGCG---------------GCguCCAGUU--UGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 36968 0.73 0.206059
Target:  5'- gUCGucucGGCGUCGCgcGGGUCGAGCucgccggcgAGCACg -3'
miRNA:   3'- -AGCu---CCGCGGCG--UCCAGUUUG---------UCGUG- -5'
27996 5' -56.7 NC_005887.1 + 24419 0.72 0.235663
Target:  5'- aCGAGcucguucguGCGCaCGCAGGUCGcgAGCAGgACa -3'
miRNA:   3'- aGCUC---------CGCG-GCGUCCAGU--UUGUCgUG- -5'
27996 5' -56.7 NC_005887.1 + 4624 0.71 0.29035
Target:  5'- cCGcGGCGCCGguGGcCGc-CGGCGCg -3'
miRNA:   3'- aGCuCCGCGGCguCCaGUuuGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 32290 0.7 0.297846
Target:  5'- aCGGGGCGaUCGuCGGGcCAGcCGGCGCg -3'
miRNA:   3'- aGCUCCGC-GGC-GUCCaGUUuGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 11130 0.7 0.305491
Target:  5'- cCGAGGCGCCGU------GGCGGCGCa -3'
miRNA:   3'- aGCUCCGCGGCGuccaguUUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 26205 0.68 0.418341
Target:  5'- aCGGGGCGgCGguGGcCGGccuGCAGCugGCg -3'
miRNA:   3'- aGCUCCGCgGCguCCaGUU---UGUCG--UG- -5'
27996 5' -56.7 NC_005887.1 + 31210 0.68 0.408799
Target:  5'- uUCG-GGCGCCGCGuG-Cuu-CAGCACg -3'
miRNA:   3'- -AGCuCCGCGGCGUcCaGuuuGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 10202 0.68 0.399393
Target:  5'- gUCGAGuGCGUCGCGucgaugcccGcGcCGGACGGCGCg -3'
miRNA:   3'- -AGCUC-CGCGGCGU---------C-CaGUUUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 9884 0.68 0.399393
Target:  5'- uUCGAaaaGGauccaGCCgguGCAGGUCG-GCGGCACg -3'
miRNA:   3'- -AGCU---CCg----CGG---CGUCCAGUuUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 11797 0.7 0.315652
Target:  5'- cUCGGcGGCGUCgguucguacgcuaagGCAGGcggcggccuguucUCGAGCAGCACg -3'
miRNA:   3'- -AGCU-CCGCGG---------------CGUCC-------------AGUUUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 29719 0.69 0.381004
Target:  5'- cCGucGCGUCGCAGGaUCAcGCGccGCGCg -3'
miRNA:   3'- aGCucCGCGGCGUCC-AGUuUGU--CGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.