miRNA display CGI


Results 21 - 40 of 79 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27996 5' -56.7 NC_005887.1 + 10202 0.68 0.399393
Target:  5'- gUCGAGuGCGUCGCGucgaugcccGcGcCGGACGGCGCg -3'
miRNA:   3'- -AGCUC-CGCGGCGU---------C-CaGUUUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 10563 0.68 0.390128
Target:  5'- aCGccGGCGCCGCAaacGG---GACAGCGCa -3'
miRNA:   3'- aGCu-CCGCGGCGU---CCaguUUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 10612 0.66 0.532384
Target:  5'- aCGGGGCGCagcgaagcguuugcaGCAGG-CAGaacGCcGCACg -3'
miRNA:   3'- aGCUCCGCGg--------------CGUCCaGUU---UGuCGUG- -5'
27996 5' -56.7 NC_005887.1 + 10753 0.72 0.24847
Target:  5'- aUCGGacuGGCGCgGCGGGUaCGAGgGGCAg -3'
miRNA:   3'- -AGCU---CCGCGgCGUCCA-GUUUgUCGUg -5'
27996 5' -56.7 NC_005887.1 + 11130 0.7 0.305491
Target:  5'- cCGAGGCGCCGU------GGCGGCGCa -3'
miRNA:   3'- aGCUCCGCGGCGuccaguUUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 11797 0.7 0.315652
Target:  5'- cUCGGcGGCGUCgguucguacgcuaagGCAGGcggcggccuguucUCGAGCAGCACg -3'
miRNA:   3'- -AGCU-CCGCGG---------------CGUCC-------------AGUUUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 12362 0.69 0.363188
Target:  5'- gCGGuGaCGUgGCAGGcCGAGCAGCACc -3'
miRNA:   3'- aGCUcC-GCGgCGUCCaGUUUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 12708 0.66 0.531301
Target:  5'- aCGc-GCGCaCGCuGGUCGcGCAGCAg -3'
miRNA:   3'- aGCucCGCG-GCGuCCAGUuUGUCGUg -5'
27996 5' -56.7 NC_005887.1 + 13629 0.68 0.428017
Target:  5'- gCGcGGCgGCCGCAcucaGcCGAGCAGCACc -3'
miRNA:   3'- aGCuCCG-CGGCGUc---CaGUUUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 14209 0.76 0.135889
Target:  5'- gCGAGGUGuuGCAGGUC--GCcGCGCu -3'
miRNA:   3'- aGCUCCGCggCGUCCAGuuUGuCGUG- -5'
27996 5' -56.7 NC_005887.1 + 15821 0.69 0.372023
Target:  5'- aCGAGGCGCagguGCAGcGcUUgcGCGGCGCg -3'
miRNA:   3'- aGCUCCGCGg---CGUC-C-AGuuUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 16858 0.66 0.509812
Target:  5'- gCGAGGUGuaCCGCGGcG-CGGACGGCuCg -3'
miRNA:   3'- aGCUCCGC--GGCGUC-CaGUUUGUCGuG- -5'
27996 5' -56.7 NC_005887.1 + 17284 0.66 0.531301
Target:  5'- gUCGGgcGGCGCCGCGcgcgcaaacgccGGUU---CGGCGCa -3'
miRNA:   3'- -AGCU--CCGCGGCGU------------CCAGuuuGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 17550 0.69 0.354499
Target:  5'- aUCGAGaaGCCGCu-GUCGGcCAGCACa -3'
miRNA:   3'- -AGCUCcgCGGCGucCAGUUuGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 17909 0.72 0.24847
Target:  5'- uUCGGcGGCGUCaCAGGUUGGACGGaCGCg -3'
miRNA:   3'- -AGCU-CCGCGGcGUCCAGUUUGUC-GUG- -5'
27996 5' -56.7 NC_005887.1 + 18396 0.66 0.55311
Target:  5'- cCGAGGuCGUCGguGcGUgcgCAGACGGcCGCg -3'
miRNA:   3'- aGCUCC-GCGGCguC-CA---GUUUGUC-GUG- -5'
27996 5' -56.7 NC_005887.1 + 18824 0.69 0.345958
Target:  5'- cCGAGaaccuguCGCCGgGGGUCAcGCAGCGa -3'
miRNA:   3'- aGCUCc------GCGGCgUCCAGUuUGUCGUg -5'
27996 5' -56.7 NC_005887.1 + 19181 0.66 0.520513
Target:  5'- cCGuGaGCGgCGCGGGcguggagaCAGGCGGCGCg -3'
miRNA:   3'- aGCuC-CGCgGCGUCCa-------GUUUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 19722 0.69 0.381004
Target:  5'- -aGGGGUGUCGCGgaucuGGUgCAuuGGCGGCACg -3'
miRNA:   3'- agCUCCGCGGCGU-----CCA-GU--UUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 20121 0.67 0.48244
Target:  5'- uUCGAGGCguacaacuacuaucaGCUGUGGGaugcgcaaacgUCAAGCGGCGg -3'
miRNA:   3'- -AGCUCCG---------------CGGCGUCC-----------AGUUUGUCGUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.