Results 1 - 20 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27996 | 5' | -56.7 | NC_005887.1 | + | 1070 | 0.68 | 0.418341 |
Target: 5'- -aGcAGcGCGCCcgugcGCAGGUCG-ACGGCGCc -3' miRNA: 3'- agC-UC-CGCGG-----CGUCCAGUuUGUCGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 1232 | 0.69 | 0.372023 |
Target: 5'- gCG-GGCGCUGCGcGG-CGcuCAGCACg -3' miRNA: 3'- aGCuCCGCGGCGU-CCaGUuuGUCGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 1388 | 0.66 | 0.519439 |
Target: 5'- aUC-AGGC-CCGCGccgaagcGGUCGAGCAuGCGCu -3' miRNA: 3'- -AGcUCCGcGGCGU-------CCAGUUUGU-CGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 1762 | 0.67 | 0.457819 |
Target: 5'- gUCGAGGaaCCGCGGGUUGuacuuGCucgAGCGCg -3' miRNA: 3'- -AGCUCCgcGGCGUCCAGUu----UG---UCGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 2183 | 0.68 | 0.437825 |
Target: 5'- cUGAcGCcgGCCGCGGuGaUCGGGCAGCGCa -3' miRNA: 3'- aGCUcCG--CGGCGUC-C-AGUUUGUCGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 2472 | 0.71 | 0.275805 |
Target: 5'- aCGAGGCGCugaCGCGGaUCAucGACGGCGa -3' miRNA: 3'- aGCUCCGCG---GCGUCcAGU--UUGUCGUg -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 2488 | 0.66 | 0.542169 |
Target: 5'- gCGAGGCGCUcaGCGgugagcGGUCGauugaugugcGACGGCGg -3' miRNA: 3'- aGCUCCGCGG--CGU------CCAGU----------UUGUCGUg -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 2637 | 0.68 | 0.418341 |
Target: 5'- cCGAGGCgagucaguaccuGCUGguGGgcgCGGGCgAGCACa -3' miRNA: 3'- aGCUCCG------------CGGCguCCa--GUUUG-UCGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 4467 | 0.74 | 0.170058 |
Target: 5'- uUCGAcccGGCuGCCGCgaAGGUgcCGAACGGCGCg -3' miRNA: 3'- -AGCU---CCG-CGGCG--UCCA--GUUUGUCGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 4624 | 0.71 | 0.29035 |
Target: 5'- cCGcGGCGCCGguGGcCGc-CGGCGCg -3' miRNA: 3'- aGCuCCGCGGCguCCaGUuuGUCGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 5414 | 0.69 | 0.3545 |
Target: 5'- gCGGgcGGCGCCGCAG--CGAcCGGCGCg -3' miRNA: 3'- aGCU--CCGCGGCGUCcaGUUuGUCGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 5822 | 0.67 | 0.478291 |
Target: 5'- aUCGAGuCGgCGCGGGUCGcgAAgGGCGa -3' miRNA: 3'- -AGCUCcGCgGCGUCCAGU--UUgUCGUg -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 6043 | 0.66 | 0.542169 |
Target: 5'- cCGGguGGUGCUGguGG-CAGcggcGCGGCACu -3' miRNA: 3'- aGCU--CCGCGGCguCCaGUU----UGUCGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 6334 | 0.68 | 0.441784 |
Target: 5'- cCGAGGUgacGCUGCuGGUUGAACaacggcuguccaucgAGCACa -3' miRNA: 3'- aGCUCCG---CGGCGuCCAGUUUG---------------UCGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 6381 | 0.68 | 0.437825 |
Target: 5'- aCG-GGCGaaCGCGGGgCGAAgGGCACg -3' miRNA: 3'- aGCuCCGCg-GCGUCCaGUUUgUCGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 6479 | 0.68 | 0.437825 |
Target: 5'- gCGcGGCGUCGCGGuGUCu-GCcgAGCGCa -3' miRNA: 3'- aGCuCCGCGGCGUC-CAGuuUG--UCGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 7217 | 0.67 | 0.488695 |
Target: 5'- gCGcAGGCGCUGuCGGcGUCGGGC-GCAUc -3' miRNA: 3'- aGC-UCCGCGGC-GUC-CAGUUUGuCGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 8121 | 0.71 | 0.283003 |
Target: 5'- cCGAGGCGCCGCuguucGGGUU---CAGCu- -3' miRNA: 3'- aGCUCCGCGGCG-----UCCAGuuuGUCGug -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 9282 | 0.67 | 0.457819 |
Target: 5'- gUCGGcacGGCgacGCCGCAGGUUAcg-GGCACc -3' miRNA: 3'- -AGCU---CCG---CGGCGUCCAGUuugUCGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 9884 | 0.68 | 0.399393 |
Target: 5'- uUCGAaaaGGauccaGCCgguGCAGGUCG-GCGGCACg -3' miRNA: 3'- -AGCU---CCg----CGG---CGUCCAGUuUGUCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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