miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27996 5' -56.7 NC_005887.1 + 1070 0.68 0.418341
Target:  5'- -aGcAGcGCGCCcgugcGCAGGUCG-ACGGCGCc -3'
miRNA:   3'- agC-UC-CGCGG-----CGUCCAGUuUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 1232 0.69 0.372023
Target:  5'- gCG-GGCGCUGCGcGG-CGcuCAGCACg -3'
miRNA:   3'- aGCuCCGCGGCGU-CCaGUuuGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 1388 0.66 0.519439
Target:  5'- aUC-AGGC-CCGCGccgaagcGGUCGAGCAuGCGCu -3'
miRNA:   3'- -AGcUCCGcGGCGU-------CCAGUUUGU-CGUG- -5'
27996 5' -56.7 NC_005887.1 + 1762 0.67 0.457819
Target:  5'- gUCGAGGaaCCGCGGGUUGuacuuGCucgAGCGCg -3'
miRNA:   3'- -AGCUCCgcGGCGUCCAGUu----UG---UCGUG- -5'
27996 5' -56.7 NC_005887.1 + 2183 0.68 0.437825
Target:  5'- cUGAcGCcgGCCGCGGuGaUCGGGCAGCGCa -3'
miRNA:   3'- aGCUcCG--CGGCGUC-C-AGUUUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 2472 0.71 0.275805
Target:  5'- aCGAGGCGCugaCGCGGaUCAucGACGGCGa -3'
miRNA:   3'- aGCUCCGCG---GCGUCcAGU--UUGUCGUg -5'
27996 5' -56.7 NC_005887.1 + 2488 0.66 0.542169
Target:  5'- gCGAGGCGCUcaGCGgugagcGGUCGauugaugugcGACGGCGg -3'
miRNA:   3'- aGCUCCGCGG--CGU------CCAGU----------UUGUCGUg -5'
27996 5' -56.7 NC_005887.1 + 2637 0.68 0.418341
Target:  5'- cCGAGGCgagucaguaccuGCUGguGGgcgCGGGCgAGCACa -3'
miRNA:   3'- aGCUCCG------------CGGCguCCa--GUUUG-UCGUG- -5'
27996 5' -56.7 NC_005887.1 + 4467 0.74 0.170058
Target:  5'- uUCGAcccGGCuGCCGCgaAGGUgcCGAACGGCGCg -3'
miRNA:   3'- -AGCU---CCG-CGGCG--UCCA--GUUUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 4624 0.71 0.29035
Target:  5'- cCGcGGCGCCGguGGcCGc-CGGCGCg -3'
miRNA:   3'- aGCuCCGCGGCguCCaGUuuGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 5414 0.69 0.3545
Target:  5'- gCGGgcGGCGCCGCAG--CGAcCGGCGCg -3'
miRNA:   3'- aGCU--CCGCGGCGUCcaGUUuGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 5822 0.67 0.478291
Target:  5'- aUCGAGuCGgCGCGGGUCGcgAAgGGCGa -3'
miRNA:   3'- -AGCUCcGCgGCGUCCAGU--UUgUCGUg -5'
27996 5' -56.7 NC_005887.1 + 6043 0.66 0.542169
Target:  5'- cCGGguGGUGCUGguGG-CAGcggcGCGGCACu -3'
miRNA:   3'- aGCU--CCGCGGCguCCaGUU----UGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 6334 0.68 0.441784
Target:  5'- cCGAGGUgacGCUGCuGGUUGAACaacggcuguccaucgAGCACa -3'
miRNA:   3'- aGCUCCG---CGGCGuCCAGUUUG---------------UCGUG- -5'
27996 5' -56.7 NC_005887.1 + 6381 0.68 0.437825
Target:  5'- aCG-GGCGaaCGCGGGgCGAAgGGCACg -3'
miRNA:   3'- aGCuCCGCg-GCGUCCaGUUUgUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 6479 0.68 0.437825
Target:  5'- gCGcGGCGUCGCGGuGUCu-GCcgAGCGCa -3'
miRNA:   3'- aGCuCCGCGGCGUC-CAGuuUG--UCGUG- -5'
27996 5' -56.7 NC_005887.1 + 7217 0.67 0.488695
Target:  5'- gCGcAGGCGCUGuCGGcGUCGGGC-GCAUc -3'
miRNA:   3'- aGC-UCCGCGGC-GUC-CAGUUUGuCGUG- -5'
27996 5' -56.7 NC_005887.1 + 8121 0.71 0.283003
Target:  5'- cCGAGGCGCCGCuguucGGGUU---CAGCu- -3'
miRNA:   3'- aGCUCCGCGGCG-----UCCAGuuuGUCGug -5'
27996 5' -56.7 NC_005887.1 + 9282 0.67 0.457819
Target:  5'- gUCGGcacGGCgacGCCGCAGGUUAcg-GGCACc -3'
miRNA:   3'- -AGCU---CCG---CGGCGUCCAGUuugUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 9884 0.68 0.399393
Target:  5'- uUCGAaaaGGauccaGCCgguGCAGGUCG-GCGGCACg -3'
miRNA:   3'- -AGCU---CCg----CGG---CGUCCAGUuUGUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.