miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27996 5' -56.7 NC_005887.1 + 42109 1.09 0.000459
Target:  5'- gUCGAGGCGCCGCAGGUCAAACAGCACc -3'
miRNA:   3'- -AGCUCCGCGGCGUCCAGUUUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 35380 0.79 0.080199
Target:  5'- cCGAGGCGCagcuuuucaCGCAGGUuccgguucauguacCAGACGGCGCg -3'
miRNA:   3'- aGCUCCGCG---------GCGUCCA--------------GUUUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 32837 0.78 0.093586
Target:  5'- gUGAuGGcCGCCguGCAGGUCAAGCGGCAUc -3'
miRNA:   3'- aGCU-CC-GCGG--CGUCCAGUUUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 14209 0.76 0.135889
Target:  5'- gCGAGGUGuuGCAGGUC--GCcGCGCu -3'
miRNA:   3'- aGCUCCGCggCGUCCAGuuUGuCGUG- -5'
27996 5' -56.7 NC_005887.1 + 28103 0.75 0.15382
Target:  5'- cCGGGGCGUgcgugacggucugguUGguGGUCAAgaACAGCGCg -3'
miRNA:   3'- aGCUCCGCG---------------GCguCCAGUU--UGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 25507 0.75 0.156425
Target:  5'- aCGAuGGCGCgGCGGGU--GGCGGCAUa -3'
miRNA:   3'- aGCU-CCGCGgCGUCCAguUUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 4467 0.74 0.170058
Target:  5'- uUCGAcccGGCuGCCGCgaAGGUgcCGAACGGCGCg -3'
miRNA:   3'- -AGCU---CCG-CGGCG--UCCA--GUUUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 36968 0.73 0.206059
Target:  5'- gUCGucucGGCGUCGCgcGGGUCGAGCucgccggcgAGCACg -3'
miRNA:   3'- -AGCu---CCGCGGCG--UCCAGUUUG---------UCGUG- -5'
27996 5' -56.7 NC_005887.1 + 39902 0.73 0.217495
Target:  5'- gUCGAcGGCGCCGUAGcgcgcgagguGUCAuucguCGGCGCg -3'
miRNA:   3'- -AGCU-CCGCGGCGUC----------CAGUuu---GUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 24419 0.72 0.235663
Target:  5'- aCGAGcucguucguGCGCaCGCAGGUCGcgAGCAGgACa -3'
miRNA:   3'- aGCUC---------CGCG-GCGUCCAGU--UUGUCgUG- -5'
27996 5' -56.7 NC_005887.1 + 26206 0.72 0.240081
Target:  5'- cUCGGcGCGCCGguGGUUGGcggggugguugcgcGCGGCGCa -3'
miRNA:   3'- -AGCUcCGCGGCguCCAGUU--------------UGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 10753 0.72 0.24847
Target:  5'- aUCGGacuGGCGCgGCGGGUaCGAGgGGCAg -3'
miRNA:   3'- -AGCU---CCGCGgCGUCCA-GUUUgUCGUg -5'
27996 5' -56.7 NC_005887.1 + 17909 0.72 0.24847
Target:  5'- uUCGGcGGCGUCaCAGGUUGGACGGaCGCg -3'
miRNA:   3'- -AGCU-CCGCGGcGUCCAGUUUGUC-GUG- -5'
27996 5' -56.7 NC_005887.1 + 25264 0.71 0.255087
Target:  5'- gUCGAGGUaUUGCGagcGGUCGAGCAGCGg -3'
miRNA:   3'- -AGCUCCGcGGCGU---CCAGUUUGUCGUg -5'
27996 5' -56.7 NC_005887.1 + 37205 0.71 0.261847
Target:  5'- gCGGcGCGCCGac-GUCGGGCAGCGCg -3'
miRNA:   3'- aGCUcCGCGGCgucCAGUUUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 2472 0.71 0.275805
Target:  5'- aCGAGGCGCugaCGCGGaUCAucGACGGCGa -3'
miRNA:   3'- aGCUCCGCG---GCGUCcAGU--UUGUCGUg -5'
27996 5' -56.7 NC_005887.1 + 8121 0.71 0.283003
Target:  5'- cCGAGGCGCCGCuguucGGGUU---CAGCu- -3'
miRNA:   3'- aGCUCCGCGGCG-----UCCAGuuuGUCGug -5'
27996 5' -56.7 NC_005887.1 + 4624 0.71 0.29035
Target:  5'- cCGcGGCGCCGguGGcCGc-CGGCGCg -3'
miRNA:   3'- aGCuCCGCGGCguCCaGUuuGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 32290 0.7 0.297846
Target:  5'- aCGGGGCGaUCGuCGGGcCAGcCGGCGCg -3'
miRNA:   3'- aGCUCCGC-GGC-GUCCaGUUuGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 28140 0.7 0.305491
Target:  5'- gCGcGGCGCCGCccuguccgAGGcCGcgcccGACAGCGCg -3'
miRNA:   3'- aGCuCCGCGGCG--------UCCaGU-----UUGUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.