miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27996 5' -56.7 NC_005887.1 + 29719 0.69 0.381004
Target:  5'- cCGucGCGUCGCAGGaUCAcGCGccGCGCg -3'
miRNA:   3'- aGCucCGCGGCGUCC-AGUuUGU--CGUG- -5'
27996 5' -56.7 NC_005887.1 + 28925 0.68 0.418341
Target:  5'- gCGGuGCGCCGCucGUCGcAGCAGCGg -3'
miRNA:   3'- aGCUcCGCGGCGucCAGU-UUGUCGUg -5'
27996 5' -56.7 NC_005887.1 + 28189 0.7 0.324449
Target:  5'- aUCGGGcugugcgccgcaucaGCGCCGCGcgucucggcGGUUuuGAGCAGCGCg -3'
miRNA:   3'- -AGCUC---------------CGCGGCGU---------CCAG--UUUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 28140 0.7 0.305491
Target:  5'- gCGcGGCGCCGCccuguccgAGGcCGcgcccGACAGCGCg -3'
miRNA:   3'- aGCuCCGCGGCG--------UCCaGU-----UUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 28103 0.75 0.15382
Target:  5'- cCGGGGCGUgcgugacggucugguUGguGGUCAAgaACAGCGCg -3'
miRNA:   3'- aGCUCCGCG---------------GCguCCAGUU--UGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 28053 0.68 0.428017
Target:  5'- aUCGAgcaGGCGCUGCGccacccauguucGGUCAcGCuGCAUg -3'
miRNA:   3'- -AGCU---CCGCGGCGU------------CCAGUuUGuCGUG- -5'
27996 5' -56.7 NC_005887.1 + 27398 0.67 0.478291
Target:  5'- gUCGAGuuGCgGCGcGUCGuacGGCAGCGCg -3'
miRNA:   3'- -AGCUCcgCGgCGUcCAGU---UUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 26206 0.72 0.240081
Target:  5'- cUCGGcGCGCCGguGGUUGGcggggugguugcgcGCGGCGCa -3'
miRNA:   3'- -AGCUcCGCGGCguCCAGUU--------------UGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 26205 0.68 0.418341
Target:  5'- aCGGGGCGgCGguGGcCGGccuGCAGCugGCg -3'
miRNA:   3'- aGCUCCGCgGCguCCaGUU---UGUCG--UG- -5'
27996 5' -56.7 NC_005887.1 + 25507 0.75 0.156425
Target:  5'- aCGAuGGCGCgGCGGGU--GGCGGCAUa -3'
miRNA:   3'- aGCU-CCGCGgCGUCCAguUUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 25264 0.71 0.255087
Target:  5'- gUCGAGGUaUUGCGagcGGUCGAGCAGCGg -3'
miRNA:   3'- -AGCUCCGcGGCGU---CCAGUUUGUCGUg -5'
27996 5' -56.7 NC_005887.1 + 25127 0.67 0.457819
Target:  5'- cCGAGauccaGCGCCGCagcugcAGGUCGucgAGCACa -3'
miRNA:   3'- aGCUC-----CGCGGCG------UCCAGUuugUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 24602 0.7 0.321229
Target:  5'- uUCGcGGCgaugaucuugcgGCCGCAcgcguGGUCGAACAGCuGCg -3'
miRNA:   3'- -AGCuCCG------------CGGCGU-----CCAGUUUGUCG-UG- -5'
27996 5' -56.7 NC_005887.1 + 24419 0.72 0.235663
Target:  5'- aCGAGcucguucguGCGCaCGCAGGUCGcgAGCAGgACa -3'
miRNA:   3'- aGCUC---------CGCG-GCGUCCAGU--UUGUCgUG- -5'
27996 5' -56.7 NC_005887.1 + 24378 0.67 0.44776
Target:  5'- aCGAGccGCGCUGCAGGUCGAuCAa--- -3'
miRNA:   3'- aGCUC--CGCGGCGUCCAGUUuGUcgug -5'
27996 5' -56.7 NC_005887.1 + 23947 0.7 0.324449
Target:  5'- aCGAcGGCGCCGCGGcGUaggccaucggguucgCGAGCgccGGCGCg -3'
miRNA:   3'- aGCU-CCGCGGCGUC-CA---------------GUUUG---UCGUG- -5'
27996 5' -56.7 NC_005887.1 + 23334 0.67 0.503435
Target:  5'- uUCGAagaggugacagucauGGCGCgGCcuuuGGUUAGACuGCGCc -3'
miRNA:   3'- -AGCU---------------CCGCGgCGu---CCAGUUUGuCGUG- -5'
27996 5' -56.7 NC_005887.1 + 21865 0.68 0.437825
Target:  5'- aCGAcuGGCGCacaGCAGcUCAu-CAGCACg -3'
miRNA:   3'- aGCU--CCGCGg--CGUCcAGUuuGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 21547 0.66 0.55311
Target:  5'- aCGA--CGCUGCAGG-CGAcCGGCGCa -3'
miRNA:   3'- aGCUccGCGGCGUCCaGUUuGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 20121 0.67 0.48244
Target:  5'- uUCGAGGCguacaacuacuaucaGCUGUGGGaugcgcaaacgUCAAGCGGCGg -3'
miRNA:   3'- -AGCUCCG---------------CGGCGUCC-----------AGUUUGUCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.