miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27996 5' -56.7 NC_005887.1 + 31954 0.67 0.457819
Target:  5'- uUCGAGGUGCCcgaggccgGCGauaGUCGAcguCGGCACg -3'
miRNA:   3'- -AGCUCCGCGG--------CGUc--CAGUUu--GUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 35221 0.67 0.464932
Target:  5'- gUUGAacGGCGCCGCAGcgccgccccgccucGUUAGACcacGCGCg -3'
miRNA:   3'- -AGCU--CCGCGGCGUC--------------CAGUUUGu--CGUG- -5'
27996 5' -56.7 NC_005887.1 + 27398 0.67 0.478291
Target:  5'- gUCGAGuuGCgGCGcGUCGuacGGCAGCGCg -3'
miRNA:   3'- -AGCUCcgCGgCGUcCAGU---UUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 34845 0.67 0.488695
Target:  5'- cUCGGGGUcguGCCGCcgaGGGUguaguucaagcgCAggUAGCGCu -3'
miRNA:   3'- -AGCUCCG---CGGCG---UCCA------------GUuuGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 23334 0.67 0.503435
Target:  5'- uUCGAagaggugacagucauGGCGCgGCcuuuGGUUAGACuGCGCc -3'
miRNA:   3'- -AGCU---------------CCGCGgCGu---CCAGUUUGuCGUG- -5'
27996 5' -56.7 NC_005887.1 + 20121 0.67 0.48244
Target:  5'- uUCGAGGCguacaacuacuaucaGCUGUGGGaugcgcaaacgUCAAGCGGCGg -3'
miRNA:   3'- -AGCUCCG---------------CGGCGUCC-----------AGUUUGUCGUg -5'
27996 5' -56.7 NC_005887.1 + 32796 0.67 0.488695
Target:  5'- aUCGGcGcGCGCCGCuucacGGgcaCGAACAGCGg -3'
miRNA:   3'- -AGCU-C-CGCGGCGu----CCa--GUUUGUCGUg -5'
27996 5' -56.7 NC_005887.1 + 7217 0.67 0.488695
Target:  5'- gCGcAGGCGCUGuCGGcGUCGGGC-GCAUc -3'
miRNA:   3'- aGC-UCCGCGGC-GUC-CAGUUUGuCGUG- -5'
27996 5' -56.7 NC_005887.1 + 39197 0.67 0.467997
Target:  5'- gUCGAGGCGCgGCA--UCAggUAGUc- -3'
miRNA:   3'- -AGCUCCGCGgCGUccAGUuuGUCGug -5'
27996 5' -56.7 NC_005887.1 + 2183 0.68 0.437825
Target:  5'- cUGAcGCcgGCCGCGGuGaUCGGGCAGCGCa -3'
miRNA:   3'- aGCUcCG--CGGCGUC-C-AGUUUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 21865 0.68 0.437825
Target:  5'- aCGAcuGGCGCacaGCAGcUCAu-CAGCACg -3'
miRNA:   3'- aGCU--CCGCGg--CGUCcAGUuuGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 35462 0.68 0.428017
Target:  5'- cCGAGGCGuUCGUu-GUCGAGCAGguCg -3'
miRNA:   3'- aGCUCCGC-GGCGucCAGUUUGUCguG- -5'
27996 5' -56.7 NC_005887.1 + 28053 0.68 0.428017
Target:  5'- aUCGAgcaGGCGCUGCGccacccauguucGGUCAcGCuGCAUg -3'
miRNA:   3'- -AGCU---CCGCGGCGU------------CCAGUuUGuCGUG- -5'
27996 5' -56.7 NC_005887.1 + 2637 0.68 0.418341
Target:  5'- cCGAGGCgagucaguaccuGCUGguGGgcgCGGGCgAGCACa -3'
miRNA:   3'- aGCUCCG------------CGGCguCCa--GUUUG-UCGUG- -5'
27996 5' -56.7 NC_005887.1 + 26205 0.68 0.418341
Target:  5'- aCGGGGCGgCGguGGcCGGccuGCAGCugGCg -3'
miRNA:   3'- aGCUCCGCgGCguCCaGUU---UGUCG--UG- -5'
27996 5' -56.7 NC_005887.1 + 31210 0.68 0.408799
Target:  5'- uUCG-GGCGCCGCGuG-Cuu-CAGCACg -3'
miRNA:   3'- -AGCuCCGCGGCGUcCaGuuuGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 10202 0.68 0.399393
Target:  5'- gUCGAGuGCGUCGCGucgaugcccGcGcCGGACGGCGCg -3'
miRNA:   3'- -AGCUC-CGCGGCGU---------C-CaGUUUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 9884 0.68 0.399393
Target:  5'- uUCGAaaaGGauccaGCCgguGCAGGUCG-GCGGCACg -3'
miRNA:   3'- -AGCU---CCg----CGG---CGUCCAGUuUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 10563 0.68 0.390128
Target:  5'- aCGccGGCGCCGCAaacGG---GACAGCGCa -3'
miRNA:   3'- aGCu-CCGCGGCGU---CCaguUUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 13629 0.68 0.428017
Target:  5'- gCGcGGCgGCCGCAcucaGcCGAGCAGCACc -3'
miRNA:   3'- aGCuCCG-CGGCGUc---CaGUUUGUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.