miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27996 5' -56.7 NC_005887.1 + 15821 0.69 0.372023
Target:  5'- aCGAGGCGCagguGCAGcGcUUgcGCGGCGCg -3'
miRNA:   3'- aGCUCCGCGg---CGUC-C-AGuuUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 1232 0.69 0.372023
Target:  5'- gCG-GGCGCUGCGcGG-CGcuCAGCACg -3'
miRNA:   3'- aGCuCCGCGGCGU-CCaGUuuGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 2472 0.71 0.275805
Target:  5'- aCGAGGCGCugaCGCGGaUCAucGACGGCGa -3'
miRNA:   3'- aGCUCCGCG---GCGUCcAGU--UUGUCGUg -5'
27996 5' -56.7 NC_005887.1 + 10753 0.72 0.24847
Target:  5'- aUCGGacuGGCGCgGCGGGUaCGAGgGGCAg -3'
miRNA:   3'- -AGCU---CCGCGgCGUCCA-GUUUgUCGUg -5'
27996 5' -56.7 NC_005887.1 + 17909 0.72 0.24847
Target:  5'- uUCGGcGGCGUCaCAGGUUGGACGGaCGCg -3'
miRNA:   3'- -AGCU-CCGCGGcGUCCAGUUUGUC-GUG- -5'
27996 5' -56.7 NC_005887.1 + 24419 0.72 0.235663
Target:  5'- aCGAGcucguucguGCGCaCGCAGGUCGcgAGCAGgACa -3'
miRNA:   3'- aGCUC---------CGCG-GCGUCCAGU--UUGUCgUG- -5'
27996 5' -56.7 NC_005887.1 + 36968 0.73 0.206059
Target:  5'- gUCGucucGGCGUCGCgcGGGUCGAGCucgccggcgAGCACg -3'
miRNA:   3'- -AGCu---CCGCGGCG--UCCAGUUUG---------UCGUG- -5'
27996 5' -56.7 NC_005887.1 + 4467 0.74 0.170058
Target:  5'- uUCGAcccGGCuGCCGCgaAGGUgcCGAACGGCGCg -3'
miRNA:   3'- -AGCU---CCG-CGGCG--UCCA--GUUUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 25507 0.75 0.156425
Target:  5'- aCGAuGGCGCgGCGGGU--GGCGGCAUa -3'
miRNA:   3'- aGCU-CCGCGgCGUCCAguUUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 28103 0.75 0.15382
Target:  5'- cCGGGGCGUgcgugacggucugguUGguGGUCAAgaACAGCGCg -3'
miRNA:   3'- aGCUCCGCG---------------GCguCCAGUU--UGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 8121 0.71 0.283003
Target:  5'- cCGAGGCGCCGCuguucGGGUU---CAGCu- -3'
miRNA:   3'- aGCUCCGCGGCG-----UCCAGuuuGUCGug -5'
27996 5' -56.7 NC_005887.1 + 4624 0.71 0.29035
Target:  5'- cCGcGGCGCCGguGGcCGc-CGGCGCg -3'
miRNA:   3'- aGCuCCGCGGCguCCaGUuuGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 12362 0.69 0.363188
Target:  5'- gCGGuGaCGUgGCAGGcCGAGCAGCACc -3'
miRNA:   3'- aGCUcC-GCGgCGUCCaGUUUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 5414 0.69 0.3545
Target:  5'- gCGGgcGGCGCCGCAG--CGAcCGGCGCg -3'
miRNA:   3'- aGCU--CCGCGGCGUCcaGUUuGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 18824 0.69 0.345958
Target:  5'- cCGAGaaccuguCGCCGgGGGUCAcGCAGCGa -3'
miRNA:   3'- aGCUCc------GCGGCgUCCAGUuUGUCGUg -5'
27996 5' -56.7 NC_005887.1 + 28189 0.7 0.324449
Target:  5'- aUCGGGcugugcgccgcaucaGCGCCGCGcgucucggcGGUUuuGAGCAGCGCg -3'
miRNA:   3'- -AGCUC---------------CGCGGCGU---------CCAG--UUUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 24602 0.7 0.321229
Target:  5'- uUCGcGGCgaugaucuugcgGCCGCAcgcguGGUCGAACAGCuGCg -3'
miRNA:   3'- -AGCuCCG------------CGGCGU-----CCAGUUUGUCG-UG- -5'
27996 5' -56.7 NC_005887.1 + 11797 0.7 0.315652
Target:  5'- cUCGGcGGCGUCgguucguacgcuaagGCAGGcggcggccuguucUCGAGCAGCACg -3'
miRNA:   3'- -AGCU-CCGCGG---------------CGUCC-------------AGUUUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 11130 0.7 0.305491
Target:  5'- cCGAGGCGCCGU------GGCGGCGCa -3'
miRNA:   3'- aGCUCCGCGGCGuccaguUUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 32290 0.7 0.297846
Target:  5'- aCGGGGCGaUCGuCGGGcCAGcCGGCGCg -3'
miRNA:   3'- aGCUCCGC-GGC-GUCCaGUUuGUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.