Results 41 - 60 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27996 | 5' | -56.7 | NC_005887.1 | + | 11130 | 0.7 | 0.305491 |
Target: 5'- cCGAGGCGCCGU------GGCGGCGCa -3' miRNA: 3'- aGCUCCGCGGCGuccaguUUGUCGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 29719 | 0.69 | 0.381004 |
Target: 5'- cCGucGCGUCGCAGGaUCAcGCGccGCGCg -3' miRNA: 3'- aGCucCGCGGCGUCC-AGUuUGU--CGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 19722 | 0.69 | 0.381004 |
Target: 5'- -aGGGGUGUCGCGgaucuGGUgCAuuGGCGGCACg -3' miRNA: 3'- agCUCCGCGGCGU-----CCA-GU--UUGUCGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 33708 | 0.69 | 0.372023 |
Target: 5'- uUCGuGGCGCgGC-GGUCGAucugcucgaucGCGGCGa -3' miRNA: 3'- -AGCuCCGCGgCGuCCAGUU-----------UGUCGUg -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 15821 | 0.69 | 0.372023 |
Target: 5'- aCGAGGCGCagguGCAGcGcUUgcGCGGCGCg -3' miRNA: 3'- aGCUCCGCGg---CGUC-C-AGuuUGUCGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 1232 | 0.69 | 0.372023 |
Target: 5'- gCG-GGCGCUGCGcGG-CGcuCAGCACg -3' miRNA: 3'- aGCuCCGCGGCGU-CCaGUuuGUCGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 12362 | 0.69 | 0.363188 |
Target: 5'- gCGGuGaCGUgGCAGGcCGAGCAGCACc -3' miRNA: 3'- aGCUcC-GCGgCGUCCaGUUUGUCGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 5414 | 0.69 | 0.3545 |
Target: 5'- gCGGgcGGCGCCGCAG--CGAcCGGCGCg -3' miRNA: 3'- aGCU--CCGCGGCGUCcaGUUuGUCGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 18824 | 0.69 | 0.345958 |
Target: 5'- cCGAGaaccuguCGCCGgGGGUCAcGCAGCGa -3' miRNA: 3'- aGCUCc------GCGGCgUCCAGUuUGUCGUg -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 28189 | 0.7 | 0.324449 |
Target: 5'- aUCGGGcugugcgccgcaucaGCGCCGCGcgucucggcGGUUuuGAGCAGCGCg -3' miRNA: 3'- -AGCUC---------------CGCGGCGU---------CCAG--UUUGUCGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 24602 | 0.7 | 0.321229 |
Target: 5'- uUCGcGGCgaugaucuugcgGCCGCAcgcguGGUCGAACAGCuGCg -3' miRNA: 3'- -AGCuCCG------------CGGCGU-----CCAGUUUGUCG-UG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 6381 | 0.68 | 0.437825 |
Target: 5'- aCG-GGCGaaCGCGGGgCGAAgGGCACg -3' miRNA: 3'- aGCuCCGCg-GCGUCCaGUUUgUCGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 6479 | 0.68 | 0.437825 |
Target: 5'- gCGcGGCGUCGCGGuGUCu-GCcgAGCGCa -3' miRNA: 3'- aGCuCCGCGGCGUC-CAGuuUG--UCGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 28925 | 0.68 | 0.418341 |
Target: 5'- gCGGuGCGCCGCucGUCGcAGCAGCGg -3' miRNA: 3'- aGCUcCGCGGCGucCAGU-UUGUCGUg -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 1070 | 0.68 | 0.418341 |
Target: 5'- -aGcAGcGCGCCcgugcGCAGGUCG-ACGGCGCc -3' miRNA: 3'- agC-UC-CGCGG-----CGUCCAGUuUGUCGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 17550 | 0.69 | 0.354499 |
Target: 5'- aUCGAGaaGCCGCu-GUCGGcCAGCACa -3' miRNA: 3'- -AGCUCcgCGGCGucCAGUUuGUCGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 23947 | 0.7 | 0.324449 |
Target: 5'- aCGAcGGCGCCGCGGcGUaggccaucggguucgCGAGCgccGGCGCg -3' miRNA: 3'- aGCU-CCGCGGCGUC-CA---------------GUUUG---UCGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 28140 | 0.7 | 0.305491 |
Target: 5'- gCGcGGCGCCGCccuguccgAGGcCGcgcccGACAGCGCg -3' miRNA: 3'- aGCuCCGCGGCG--------UCCaGU-----UUGUCGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 37205 | 0.71 | 0.261847 |
Target: 5'- gCGGcGCGCCGac-GUCGGGCAGCGCg -3' miRNA: 3'- aGCUcCGCGGCgucCAGUUUGUCGUG- -5' |
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27996 | 5' | -56.7 | NC_005887.1 | + | 25264 | 0.71 | 0.255087 |
Target: 5'- gUCGAGGUaUUGCGagcGGUCGAGCAGCGg -3' miRNA: 3'- -AGCUCCGcGGCGU---CCAGUUUGUCGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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