miRNA display CGI


Results 41 - 60 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27996 5' -56.7 NC_005887.1 + 29719 0.69 0.381004
Target:  5'- cCGucGCGUCGCAGGaUCAcGCGccGCGCg -3'
miRNA:   3'- aGCucCGCGGCGUCC-AGUuUGU--CGUG- -5'
27996 5' -56.7 NC_005887.1 + 19722 0.69 0.381004
Target:  5'- -aGGGGUGUCGCGgaucuGGUgCAuuGGCGGCACg -3'
miRNA:   3'- agCUCCGCGGCGU-----CCA-GU--UUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 33708 0.69 0.372023
Target:  5'- uUCGuGGCGCgGC-GGUCGAucugcucgaucGCGGCGa -3'
miRNA:   3'- -AGCuCCGCGgCGuCCAGUU-----------UGUCGUg -5'
27996 5' -56.7 NC_005887.1 + 15821 0.69 0.372023
Target:  5'- aCGAGGCGCagguGCAGcGcUUgcGCGGCGCg -3'
miRNA:   3'- aGCUCCGCGg---CGUC-C-AGuuUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 1232 0.69 0.372023
Target:  5'- gCG-GGCGCUGCGcGG-CGcuCAGCACg -3'
miRNA:   3'- aGCuCCGCGGCGU-CCaGUuuGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 12362 0.69 0.363188
Target:  5'- gCGGuGaCGUgGCAGGcCGAGCAGCACc -3'
miRNA:   3'- aGCUcC-GCGgCGUCCaGUUUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 5414 0.69 0.3545
Target:  5'- gCGGgcGGCGCCGCAG--CGAcCGGCGCg -3'
miRNA:   3'- aGCU--CCGCGGCGUCcaGUUuGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 18824 0.69 0.345958
Target:  5'- cCGAGaaccuguCGCCGgGGGUCAcGCAGCGa -3'
miRNA:   3'- aGCUCc------GCGGCgUCCAGUuUGUCGUg -5'
27996 5' -56.7 NC_005887.1 + 28189 0.7 0.324449
Target:  5'- aUCGGGcugugcgccgcaucaGCGCCGCGcgucucggcGGUUuuGAGCAGCGCg -3'
miRNA:   3'- -AGCUC---------------CGCGGCGU---------CCAG--UUUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 24602 0.7 0.321229
Target:  5'- uUCGcGGCgaugaucuugcgGCCGCAcgcguGGUCGAACAGCuGCg -3'
miRNA:   3'- -AGCuCCG------------CGGCGU-----CCAGUUUGUCG-UG- -5'
27996 5' -56.7 NC_005887.1 + 11797 0.7 0.315652
Target:  5'- cUCGGcGGCGUCgguucguacgcuaagGCAGGcggcggccuguucUCGAGCAGCACg -3'
miRNA:   3'- -AGCU-CCGCGG---------------CGUCC-------------AGUUUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 27398 0.67 0.478291
Target:  5'- gUCGAGuuGCgGCGcGUCGuacGGCAGCGCg -3'
miRNA:   3'- -AGCUCcgCGgCGUcCAGU---UUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 34845 0.67 0.488695
Target:  5'- cUCGGGGUcguGCCGCcgaGGGUguaguucaagcgCAggUAGCGCu -3'
miRNA:   3'- -AGCUCCG---CGGCG---UCCA------------GUuuGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 23334 0.67 0.503435
Target:  5'- uUCGAagaggugacagucauGGCGCgGCcuuuGGUUAGACuGCGCc -3'
miRNA:   3'- -AGCU---------------CCGCGgCGu---CCAGUUUGuCGUG- -5'
27996 5' -56.7 NC_005887.1 + 34983 0.66 0.509812
Target:  5'- aCGcGGCGuuGUcgucGGUCu-GCAGCGCg -3'
miRNA:   3'- aGCuCCGCggCGu---CCAGuuUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 1388 0.66 0.519439
Target:  5'- aUC-AGGC-CCGCGccgaagcGGUCGAGCAuGCGCu -3'
miRNA:   3'- -AGcUCCGcGGCGU-------CCAGUUUGU-CGUG- -5'
27996 5' -56.7 NC_005887.1 + 10612 0.66 0.532384
Target:  5'- aCGGGGCGCagcgaagcguuugcaGCAGG-CAGaacGCcGCACg -3'
miRNA:   3'- aGCUCCGCGg--------------CGUCCaGUU---UGuCGUG- -5'
27996 5' -56.7 NC_005887.1 + 2488 0.66 0.542169
Target:  5'- gCGAGGCGCUcaGCGgugagcGGUCGauugaugugcGACGGCGg -3'
miRNA:   3'- aGCUCCGCGG--CGU------CCAGU----------UUGUCGUg -5'
27996 5' -56.7 NC_005887.1 + 34935 0.66 0.55311
Target:  5'- aCGAGGCgGCgGCGGGUgcGACcguGGCGa -3'
miRNA:   3'- aGCUCCG-CGgCGUCCAguUUG---UCGUg -5'
27996 5' -56.7 NC_005887.1 + 42109 1.09 0.000459
Target:  5'- gUCGAGGCGCCGCAGGUCAAACAGCACc -3'
miRNA:   3'- -AGCUCCGCGGCGUCCAGUUUGUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.