miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27996 5' -56.7 NC_005887.1 + 18396 0.66 0.55311
Target:  5'- cCGAGGuCGUCGguGcGUgcgCAGACGGcCGCg -3'
miRNA:   3'- aGCUCC-GCGGCguC-CA---GUUUGUC-GUG- -5'
27996 5' -56.7 NC_005887.1 + 1070 0.68 0.418341
Target:  5'- -aGcAGcGCGCCcgugcGCAGGUCG-ACGGCGCc -3'
miRNA:   3'- agC-UC-CGCGG-----CGUCCAGUuUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 23947 0.7 0.324449
Target:  5'- aCGAcGGCGCCGCGGcGUaggccaucggguucgCGAGCgccGGCGCg -3'
miRNA:   3'- aGCU-CCGCGGCGUC-CA---------------GUUUG---UCGUG- -5'
27996 5' -56.7 NC_005887.1 + 42109 1.09 0.000459
Target:  5'- gUCGAGGCGCCGCAGGUCAAACAGCACc -3'
miRNA:   3'- -AGCUCCGCGGCGUCCAGUUUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 1388 0.66 0.519439
Target:  5'- aUC-AGGC-CCGCGccgaagcGGUCGAGCAuGCGCu -3'
miRNA:   3'- -AGcUCCGcGGCGU-------CCAGUUUGU-CGUG- -5'
27996 5' -56.7 NC_005887.1 + 34983 0.66 0.509812
Target:  5'- aCGcGGCGuuGUcgucGGUCu-GCAGCGCg -3'
miRNA:   3'- aGCuCCGCggCGu---CCAGuuUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 34845 0.67 0.488695
Target:  5'- cUCGGGGUcguGCCGCcgaGGGUguaguucaagcgCAggUAGCGCu -3'
miRNA:   3'- -AGCUCCG---CGGCG---UCCA------------GUuuGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 27398 0.67 0.478291
Target:  5'- gUCGAGuuGCgGCGcGUCGuacGGCAGCGCg -3'
miRNA:   3'- -AGCUCcgCGgCGUcCAGU---UUGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 31954 0.67 0.457819
Target:  5'- uUCGAGGUGCCcgaggccgGCGauaGUCGAcguCGGCACg -3'
miRNA:   3'- -AGCUCCGCGG--------CGUc--CAGUUu--GUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 28925 0.68 0.418341
Target:  5'- gCGGuGCGCCGCucGUCGcAGCAGCGg -3'
miRNA:   3'- aGCUcCGCGGCGucCAGU-UUGUCGUg -5'
27996 5' -56.7 NC_005887.1 + 6334 0.68 0.441784
Target:  5'- cCGAGGUgacGCUGCuGGUUGAACaacggcuguccaucgAGCACa -3'
miRNA:   3'- aGCUCCG---CGGCGuCCAGUUUG---------------UCGUG- -5'
27996 5' -56.7 NC_005887.1 + 35221 0.67 0.464932
Target:  5'- gUUGAacGGCGCCGCAGcgccgccccgccucGUUAGACcacGCGCg -3'
miRNA:   3'- -AGCU--CCGCGGCGUC--------------CAGUUUGu--CGUG- -5'
27996 5' -56.7 NC_005887.1 + 34935 0.66 0.55311
Target:  5'- aCGAGGCgGCgGCGGGUgcGACcguGGCGa -3'
miRNA:   3'- aGCUCCG-CGgCGUCCAguUUG---UCGUg -5'
27996 5' -56.7 NC_005887.1 + 6381 0.68 0.437825
Target:  5'- aCG-GGCGaaCGCGGGgCGAAgGGCACg -3'
miRNA:   3'- aGCuCCGCg-GCGUCCaGUUUgUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 2488 0.66 0.542169
Target:  5'- gCGAGGCGCUcaGCGgugagcGGUCGauugaugugcGACGGCGg -3'
miRNA:   3'- aGCUCCGCGG--CGU------CCAGU----------UUGUCGUg -5'
27996 5' -56.7 NC_005887.1 + 39197 0.67 0.467997
Target:  5'- gUCGAGGCGCgGCA--UCAggUAGUc- -3'
miRNA:   3'- -AGCUCCGCGgCGUccAGUuuGUCGug -5'
27996 5' -56.7 NC_005887.1 + 6479 0.68 0.437825
Target:  5'- gCGcGGCGUCGCGGuGUCu-GCcgAGCGCa -3'
miRNA:   3'- aGCuCCGCGGCGUC-CAGuuUG--UCGUG- -5'
27996 5' -56.7 NC_005887.1 + 17550 0.69 0.354499
Target:  5'- aUCGAGaaGCCGCu-GUCGGcCAGCACa -3'
miRNA:   3'- -AGCUCcgCGGCGucCAGUUuGUCGUG- -5'
27996 5' -56.7 NC_005887.1 + 10612 0.66 0.532384
Target:  5'- aCGGGGCGCagcgaagcguuugcaGCAGG-CAGaacGCcGCACg -3'
miRNA:   3'- aGCUCCGCGg--------------CGUCCaGUU---UGuCGUG- -5'
27996 5' -56.7 NC_005887.1 + 23334 0.67 0.503435
Target:  5'- uUCGAagaggugacagucauGGCGCgGCcuuuGGUUAGACuGCGCc -3'
miRNA:   3'- -AGCU---------------CCGCGgCGu---CCAGUUUGuCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.