Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27997 | 3' | -53.7 | NC_005887.1 | + | 22355 | 0.68 | 0.603268 |
Target: 5'- gCAUGAugaugcagucUCCGGucgcAUGCgCUUCCAGCAa- -3' miRNA: 3'- -GUACU----------AGGCCu---UGCG-GAAGGUCGUcg -5' |
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27997 | 3' | -53.7 | NC_005887.1 | + | 1041 | 0.67 | 0.625996 |
Target: 5'- cCGUGAUgCGGugUuCCUUgcCCGGCGGCa -3' miRNA: 3'- -GUACUAgGCCuuGcGGAA--GGUCGUCG- -5' |
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27997 | 3' | -53.7 | NC_005887.1 | + | 20825 | 0.67 | 0.635099 |
Target: 5'- uCGUGAauuucccggcagCCGGcgucguuGCGCCgauugCCGGCGGCg -3' miRNA: 3'- -GUACUa-----------GGCCu------UGCGGaa---GGUCGUCG- -5' |
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27997 | 3' | -53.7 | NC_005887.1 | + | 2851 | 0.66 | 0.72724 |
Target: 5'- gCGUGAacuUCCaGuucgucaGCCUggCCAGCGGCa -3' miRNA: 3'- -GUACU---AGGcCuug----CGGAa-GGUCGUCG- -5' |
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27997 | 3' | -53.7 | NC_005887.1 | + | 40548 | 0.66 | 0.716231 |
Target: 5'- --aGGUCggCGGcACGuCCUUCgGGUAGCg -3' miRNA: 3'- guaCUAG--GCCuUGC-GGAAGgUCGUCG- -5' |
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27997 | 3' | -53.7 | NC_005887.1 | + | 40838 | 0.66 | 0.705134 |
Target: 5'- --aGGUCCGGGuACGUgUUCCgcacGGCcGCg -3' miRNA: 3'- guaCUAGGCCU-UGCGgAAGG----UCGuCG- -5' |
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27997 | 3' | -53.7 | NC_005887.1 | + | 30135 | 0.66 | 0.69396 |
Target: 5'- gCGUGAaaUCCGGcGCGCCcggc-GCGGCg -3' miRNA: 3'- -GUACU--AGGCCuUGCGGaagguCGUCG- -5' |
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27997 | 3' | -53.7 | NC_005887.1 | + | 41459 | 0.67 | 0.660104 |
Target: 5'- --cGAagCCGaGGcCGCCUgacucgUCCGGCGGCg -3' miRNA: 3'- guaCUa-GGC-CUuGCGGA------AGGUCGUCG- -5' |
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27997 | 3' | -53.7 | NC_005887.1 | + | 2529 | 0.67 | 0.660104 |
Target: 5'- --cGGcCCGucGCGCUUuaUCCAGCAGUg -3' miRNA: 3'- guaCUaGGCcuUGCGGA--AGGUCGUCG- -5' |
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27997 | 3' | -53.7 | NC_005887.1 | + | 26573 | 0.67 | 0.648747 |
Target: 5'- --cGAUCUGcuucuGCGCCUUCgCGGCcGCg -3' miRNA: 3'- guaCUAGGCcu---UGCGGAAG-GUCGuCG- -5' |
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27997 | 3' | -53.7 | NC_005887.1 | + | 28731 | 0.67 | 0.637374 |
Target: 5'- aGUGcggCCGccgcGCGCCgcgcugCCAGCAGCg -3' miRNA: 3'- gUACua-GGCcu--UGCGGaa----GGUCGUCG- -5' |
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27997 | 3' | -53.7 | NC_005887.1 | + | 31941 | 0.67 | 0.637374 |
Target: 5'- --cGA-CCGuAACGCCUUCgAGguGCc -3' miRNA: 3'- guaCUaGGCcUUGCGGAAGgUCguCG- -5' |
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27997 | 3' | -53.7 | NC_005887.1 | + | 40911 | 0.99 | 0.005431 |
Target: 5'- aCAUGAU-CGGAACGCCUUCCAGCAGCu -3' miRNA: 3'- -GUACUAgGCCUUGCGGAAGGUCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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