miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27997 3' -53.7 NC_005887.1 + 31941 0.67 0.637374
Target:  5'- --cGA-CCGuAACGCCUUCgAGguGCc -3'
miRNA:   3'- guaCUaGGCcUUGCGGAAGgUCguCG- -5'
27997 3' -53.7 NC_005887.1 + 32274 0.7 0.468446
Target:  5'- gCAUGAUCCGGuccacacggggcgauCGUCgggCCAGcCGGCg -3'
miRNA:   3'- -GUACUAGGCCuu-------------GCGGaa-GGUC-GUCG- -5'
27997 3' -53.7 NC_005887.1 + 32419 0.66 0.72724
Target:  5'- aCGUGG-CCGGcGGCGauguggCCGGCGGCg -3'
miRNA:   3'- -GUACUaGGCC-UUGCggaa--GGUCGUCG- -5'
27997 3' -53.7 NC_005887.1 + 33488 0.7 0.48205
Target:  5'- aCGUaAUCCGGAuCGCCgUUCAGCAuccGCg -3'
miRNA:   3'- -GUAcUAGGCCUuGCGGaAGGUCGU---CG- -5'
27997 3' -53.7 NC_005887.1 + 34671 0.67 0.625996
Target:  5'- ----uUCCGGAucCGCCacguugUCgAGCAGCa -3'
miRNA:   3'- guacuAGGCCUu-GCGGa-----AGgUCGUCG- -5'
27997 3' -53.7 NC_005887.1 + 36405 0.74 0.278926
Target:  5'- gGUGGUCUGGuucauuugcgcacCGCCUUCCGcGCGGCc -3'
miRNA:   3'- gUACUAGGCCuu-----------GCGGAAGGU-CGUCG- -5'
27997 3' -53.7 NC_005887.1 + 36973 0.68 0.591938
Target:  5'- --cGcgCUGGcuuCGCCUUCgAGCAGUc -3'
miRNA:   3'- guaCuaGGCCuu-GCGGAAGgUCGUCG- -5'
27997 3' -53.7 NC_005887.1 + 37557 0.7 0.492644
Target:  5'- --aGAUCCGcGAGCacgGCCUcgCCGGCuGGCg -3'
miRNA:   3'- guaCUAGGC-CUUG---CGGAa-GGUCG-UCG- -5'
27997 3' -53.7 NC_005887.1 + 37830 0.69 0.525037
Target:  5'- --cGA-CCGGGACGCCgccguagUCGGCgAGCa -3'
miRNA:   3'- guaCUaGGCCUUGCGGaa-----GGUCG-UCG- -5'
27997 3' -53.7 NC_005887.1 + 40548 0.66 0.716231
Target:  5'- --aGGUCggCGGcACGuCCUUCgGGUAGCg -3'
miRNA:   3'- guaCUAG--GCCuUGC-GGAAGgUCGUCG- -5'
27997 3' -53.7 NC_005887.1 + 40838 0.66 0.705134
Target:  5'- --aGGUCCGGGuACGUgUUCCgcacGGCcGCg -3'
miRNA:   3'- guaCUAGGCCU-UGCGgAAGG----UCGuCG- -5'
27997 3' -53.7 NC_005887.1 + 40911 0.99 0.005431
Target:  5'- aCAUGAU-CGGAACGCCUUCCAGCAGCu -3'
miRNA:   3'- -GUACUAgGCCUUGCGGAAGGUCGUCG- -5'
27997 3' -53.7 NC_005887.1 + 41459 0.67 0.660104
Target:  5'- --cGAagCCGaGGcCGCCUgacucgUCCGGCGGCg -3'
miRNA:   3'- guaCUa-GGC-CUuGCGGA------AGGUCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.