Results 61 - 64 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27998 | 5' | -65.7 | NC_005887.1 | + | 12535 | 0.68 | 0.150363 |
Target: 5'- uGGcGCCGCgcaCACCCGCagacuuccagCUACUGGCCCg -3' miRNA: 3'- gCUcCGGCG---GUGGGUG----------GGUGGCCGGG- -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 40395 | 0.68 | 0.153126 |
Target: 5'- --cGGCCGCCggguucacgACCCACCgauCGCCGucacgcaugacgccGCCCg -3' miRNA: 3'- gcuCCGGCGG---------UGGGUGG---GUGGC--------------CGGG- -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 10738 | 0.68 | 0.15797 |
Target: 5'- aGuGGCgGCCaguugaACCCGgcacauuCCCGCUGGCUCa -3' miRNA: 3'- gCuCCGgCGG------UGGGU-------GGGUGGCCGGG- -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 5835 | 0.66 | 0.231654 |
Target: 5'- ---uGCCGCCGCCCgAUgCugCGGUCg -3' miRNA: 3'- gcucCGGCGGUGGG-UGgGugGCCGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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