Results 41 - 60 of 62 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28000 | 5' | -55.7 | NC_005887.1 | + | 809 | 0.72 | 0.297573 |
Target: 5'- cUUCGCGugCgCGCCGAgCGCC-UCGCg -3' miRNA: 3'- cAAGUGCugG-GUGGCUaGCGGcAGUG- -5' |
|||||||
28000 | 5' | -55.7 | NC_005887.1 | + | 32547 | 0.73 | 0.268698 |
Target: 5'- cGUUCGCGggcccaaucACCCACUcAUCGCCcGUCAUg -3' miRNA: 3'- -CAAGUGC---------UGGGUGGcUAGCGG-CAGUG- -5' |
|||||||
28000 | 5' | -55.7 | NC_005887.1 | + | 32726 | 0.74 | 0.223663 |
Target: 5'- -aUCGCGAgCCACCGGUCGCgCaUCAg -3' miRNA: 3'- caAGUGCUgGGUGGCUAGCG-GcAGUg -5' |
|||||||
28000 | 5' | -55.7 | NC_005887.1 | + | 36530 | 0.78 | 0.118212 |
Target: 5'- cUUCGCGACCCGCgccgacuCGAUCGCCGccgucuggucauUCACg -3' miRNA: 3'- cAAGUGCUGGGUG-------GCUAGCGGC------------AGUG- -5' |
|||||||
28000 | 5' | -55.7 | NC_005887.1 | + | 269 | 0.67 | 0.539773 |
Target: 5'- -aUCGCGcCCCACgCGAcagCGCuCGUCGa -3' miRNA: 3'- caAGUGCuGGGUG-GCUa--GCG-GCAGUg -5' |
|||||||
28000 | 5' | -55.7 | NC_005887.1 | + | 34743 | 0.67 | 0.549533 |
Target: 5'- -gUCGCcGCCCAUCGAUcaaccggCGCCGcUUACg -3' miRNA: 3'- caAGUGcUGGGUGGCUA-------GCGGC-AGUG- -5' |
|||||||
28000 | 5' | -55.7 | NC_005887.1 | + | 5507 | 0.66 | 0.650207 |
Target: 5'- -gUCGCGAUCCAgCGcAagGCUGUCGa -3' miRNA: 3'- caAGUGCUGGGUgGC-UagCGGCAGUg -5' |
|||||||
28000 | 5' | -55.7 | NC_005887.1 | + | 34951 | 0.66 | 0.650207 |
Target: 5'- ---uGCGACCgUGgCGAUCGUCGUCGg -3' miRNA: 3'- caagUGCUGG-GUgGCUAGCGGCAGUg -5' |
|||||||
28000 | 5' | -55.7 | NC_005887.1 | + | 37666 | 0.66 | 0.639077 |
Target: 5'- --gCGCG-CCCAUCaGAcccUCGCCGUCuGCg -3' miRNA: 3'- caaGUGCuGGGUGG-CU---AGCGGCAG-UG- -5' |
|||||||
28000 | 5' | -55.7 | NC_005887.1 | + | 7499 | 0.66 | 0.639077 |
Target: 5'- --cCGCGAUCaagUCGGUUGCCGUCGa -3' miRNA: 3'- caaGUGCUGGgu-GGCUAGCGGCAGUg -5' |
|||||||
28000 | 5' | -55.7 | NC_005887.1 | + | 30437 | 0.66 | 0.63685 |
Target: 5'- uGUUCACGccagacgugagcCCCGCCGugaaGUUGCCGgCGCu -3' miRNA: 3'- -CAAGUGCu-----------GGGUGGC----UAGCGGCaGUG- -5' |
|||||||
28000 | 5' | -55.7 | NC_005887.1 | + | 36348 | 0.66 | 0.635736 |
Target: 5'- -cUCAgCGACgCACCGAUCuGCgaaaacaucuugauCGUCGCu -3' miRNA: 3'- caAGU-GCUGgGUGGCUAG-CG--------------GCAGUG- -5' |
|||||||
28000 | 5' | -55.7 | NC_005887.1 | + | 5380 | 0.66 | 0.62794 |
Target: 5'- --gCuCGACCCGCgCGA-CGCCGagACg -3' miRNA: 3'- caaGuGCUGGGUG-GCUaGCGGCagUG- -5' |
|||||||
28000 | 5' | -55.7 | NC_005887.1 | + | 37567 | 0.67 | 0.583529 |
Target: 5'- --gCACGGCCuCGCCGGcUGgCGUCAg -3' miRNA: 3'- caaGUGCUGG-GUGGCUaGCgGCAGUg -5' |
|||||||
28000 | 5' | -55.7 | NC_005887.1 | + | 30797 | 0.67 | 0.572507 |
Target: 5'- --cCGCGA-CCGCCGcgCGCUG-CGCg -3' miRNA: 3'- caaGUGCUgGGUGGCuaGCGGCaGUG- -5' |
|||||||
28000 | 5' | -55.7 | NC_005887.1 | + | 16010 | 0.67 | 0.572507 |
Target: 5'- uGUUCGCGcACCCgGCCag-CGCCGgcCACg -3' miRNA: 3'- -CAAGUGC-UGGG-UGGcuaGCGGCa-GUG- -5' |
|||||||
28000 | 5' | -55.7 | NC_005887.1 | + | 39856 | 0.67 | 0.561535 |
Target: 5'- --gCACGAgCagGCCGGgcUCGCCGUCGa -3' miRNA: 3'- caaGUGCUgGg-UGGCU--AGCGGCAGUg -5' |
|||||||
28000 | 5' | -55.7 | NC_005887.1 | + | 39453 | 0.67 | 0.561535 |
Target: 5'- cGUUCGCGG-CgGCCGAcgugucCGUCGUCGCc -3' miRNA: 3'- -CAAGUGCUgGgUGGCUa-----GCGGCAGUG- -5' |
|||||||
28000 | 5' | -55.7 | NC_005887.1 | + | 35079 | 0.67 | 0.550621 |
Target: 5'- ---gGCGGCCgggGCCGAugUCGCgGUCGCu -3' miRNA: 3'- caagUGCUGGg--UGGCU--AGCGgCAGUG- -5' |
|||||||
28000 | 5' | -55.7 | NC_005887.1 | + | 33302 | 0.67 | 0.550621 |
Target: 5'- uGUUCACGGCCgcgaacgggcCGCCGAcaaaCGUCACg -3' miRNA: 3'- -CAAGUGCUGG----------GUGGCUagcgGCAGUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home