miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28000 5' -55.7 NC_005887.1 + 13880 0.7 0.417044
Target:  5'- aGUUCGCGAgCUACCGGcUCGUgcgCGUCGg -3'
miRNA:   3'- -CAAGUGCUgGGUGGCU-AGCG---GCAGUg -5'
28000 5' -55.7 NC_005887.1 + 39778 0.69 0.436353
Target:  5'- -gUCGCGGCgCUcgcGCCGAUCGUugcgcgcguCGUCACu -3'
miRNA:   3'- caAGUGCUG-GG---UGGCUAGCG---------GCAGUG- -5'
28000 5' -55.7 NC_005887.1 + 24541 0.69 0.450172
Target:  5'- --gCGCGGCCgcaccuucggccgggCGCCcauGAUCGCCGUCAg -3'
miRNA:   3'- caaGUGCUGG---------------GUGG---CUAGCGGCAGUg -5'
28000 5' -55.7 NC_005887.1 + 8085 0.69 0.463216
Target:  5'- cGUUCACGaaagcgcgcgcgcaGCUCGCCGcgcUCGCCGagGCg -3'
miRNA:   3'- -CAAGUGC--------------UGGGUGGCu--AGCGGCagUG- -5'
28000 5' -55.7 NC_005887.1 + 21309 0.68 0.507697
Target:  5'- aUUCACGggcacGCCCACCG--CGCCGacCGCa -3'
miRNA:   3'- cAAGUGC-----UGGGUGGCuaGCGGCa-GUG- -5'
28000 5' -55.7 NC_005887.1 + 18238 0.68 0.507697
Target:  5'- -aUCGCcucGGCCaCGCCGggCaCCGUCACg -3'
miRNA:   3'- caAGUG---CUGG-GUGGCuaGcGGCAGUG- -5'
28000 5' -55.7 NC_005887.1 + 15566 0.68 0.476456
Target:  5'- --gCGCGACCgcgcucgauuCGCUGAUCGCCGaaGCu -3'
miRNA:   3'- caaGUGCUGG----------GUGGCUAGCGGCagUG- -5'
28000 5' -55.7 NC_005887.1 + 37747 0.69 0.466255
Target:  5'- aGUUcCACGAgCCCGCCcaacUUGCCGUCGu -3'
miRNA:   3'- -CAA-GUGCU-GGGUGGcu--AGCGGCAGUg -5'
28000 5' -55.7 NC_005887.1 + 9844 0.69 0.466255
Target:  5'- --gCGCGGCCaaccugaaCGCCGcgCGCCG-CACa -3'
miRNA:   3'- caaGUGCUGG--------GUGGCuaGCGGCaGUG- -5'
28000 5' -55.7 NC_005887.1 + 16010 0.67 0.572507
Target:  5'- uGUUCGCGcACCCgGCCag-CGCCGgcCACg -3'
miRNA:   3'- -CAAGUGC-UGGG-UGGcuaGCGGCa-GUG- -5'
28000 5' -55.7 NC_005887.1 + 30797 0.67 0.572507
Target:  5'- --cCGCGA-CCGCCGcgCGCUG-CGCg -3'
miRNA:   3'- caaGUGCUgGGUGGCuaGCGGCaGUG- -5'
28000 5' -55.7 NC_005887.1 + 37567 0.67 0.583529
Target:  5'- --gCACGGCCuCGCCGGcUGgCGUCAg -3'
miRNA:   3'- caaGUGCUGG-GUGGCUaGCgGCAGUg -5'
28000 5' -55.7 NC_005887.1 + 5380 0.66 0.62794
Target:  5'- --gCuCGACCCGCgCGA-CGCCGagACg -3'
miRNA:   3'- caaGuGCUGGGUG-GCUaGCGGCagUG- -5'
28000 5' -55.7 NC_005887.1 + 36348 0.66 0.635736
Target:  5'- -cUCAgCGACgCACCGAUCuGCgaaaacaucuugauCGUCGCu -3'
miRNA:   3'- caAGU-GCUGgGUGGCUAG-CG--------------GCAGUG- -5'
28000 5' -55.7 NC_005887.1 + 30437 0.66 0.63685
Target:  5'- uGUUCACGccagacgugagcCCCGCCGugaaGUUGCCGgCGCu -3'
miRNA:   3'- -CAAGUGCu-----------GGGUGGC----UAGCGGCaGUG- -5'
28000 5' -55.7 NC_005887.1 + 7499 0.66 0.639077
Target:  5'- --cCGCGAUCaagUCGGUUGCCGUCGa -3'
miRNA:   3'- caaGUGCUGGgu-GGCUAGCGGCAGUg -5'
28000 5' -55.7 NC_005887.1 + 37666 0.66 0.639077
Target:  5'- --gCGCG-CCCAUCaGAcccUCGCCGUCuGCg -3'
miRNA:   3'- caaGUGCuGGGUGG-CU---AGCGGCAG-UG- -5'
28000 5' -55.7 NC_005887.1 + 34951 0.66 0.650207
Target:  5'- ---uGCGACCgUGgCGAUCGUCGUCGg -3'
miRNA:   3'- caagUGCUGG-GUgGCUAGCGGCAGUg -5'
28000 5' -55.7 NC_005887.1 + 5507 0.66 0.650207
Target:  5'- -gUCGCGAUCCAgCGcAagGCUGUCGa -3'
miRNA:   3'- caAGUGCUGGGUgGC-UagCGGCAGUg -5'
28000 5' -55.7 NC_005887.1 + 40404 1.1 0.000612
Target:  5'- gGUUCACGACCCACCGAUCGCCGUCACg -3'
miRNA:   3'- -CAAGUGCUGGGUGGCUAGCGGCAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.