Results 21 - 40 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28000 | 5' | -55.7 | NC_005887.1 | + | 2937 | 0.69 | 0.446199 |
Target: 5'- aUUCGCGAgaUGCCGAaCGCgGUCGCg -3' miRNA: 3'- cAAGUGCUggGUGGCUaGCGgCAGUG- -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 24298 | 0.68 | 0.528998 |
Target: 5'- uGUUCACGaucGCCCaAUCG-UCGgCCGUCAg -3' miRNA: 3'- -CAAGUGC---UGGG-UGGCuAGC-GGCAGUg -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 34743 | 0.67 | 0.549533 |
Target: 5'- -gUCGCcGCCCAUCGAUcaaccggCGCCGcUUACg -3' miRNA: 3'- caAGUGcUGGGUGGCUA-------GCGGC-AGUG- -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 32547 | 0.73 | 0.268698 |
Target: 5'- cGUUCGCGggcccaaucACCCACUcAUCGCCcGUCAUg -3' miRNA: 3'- -CAAGUGC---------UGGGUGGcUAGCGG-CAGUG- -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 5240 | 0.69 | 0.466255 |
Target: 5'- ---gGCGACggCCGCgCGAUCGCCGagGCu -3' miRNA: 3'- caagUGCUG--GGUG-GCUAGCGGCagUG- -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 33302 | 0.67 | 0.550621 |
Target: 5'- uGUUCACGGCCgcgaacgggcCGCCGAcaaaCGUCACg -3' miRNA: 3'- -CAAGUGCUGG----------GUGGCUagcgGCAGUG- -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 809 | 0.72 | 0.297573 |
Target: 5'- cUUCGCGugCgCGCCGAgCGCC-UCGCg -3' miRNA: 3'- cAAGUGCugG-GUGGCUaGCGGcAGUG- -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 35079 | 0.67 | 0.550621 |
Target: 5'- ---gGCGGCCgggGCCGAugUCGCgGUCGCu -3' miRNA: 3'- caagUGCUGGg--UGGCU--AGCGgCAGUG- -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 740 | 0.7 | 0.398266 |
Target: 5'- -cUCACgGGCCgCGCCGGcCGCCG-CACc -3' miRNA: 3'- caAGUG-CUGG-GUGGCUaGCGGCaGUG- -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 32726 | 0.74 | 0.223663 |
Target: 5'- -aUCGCGAgCCACCGGUCGCgCaUCAg -3' miRNA: 3'- caAGUGCUgGGUGGCUAGCG-GcAGUg -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 39453 | 0.67 | 0.561535 |
Target: 5'- cGUUCGCGG-CgGCCGAcgugucCGUCGUCGCc -3' miRNA: 3'- -CAAGUGCUgGgUGGCUa-----GCGGCAGUG- -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 18083 | 0.68 | 0.528998 |
Target: 5'- -aUCGCGcuAUCCGgCGAcUCGCCGUgGCu -3' miRNA: 3'- caAGUGC--UGGGUgGCU-AGCGGCAgUG- -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 269 | 0.67 | 0.539773 |
Target: 5'- -aUCGCGcCCCACgCGAcagCGCuCGUCGa -3' miRNA: 3'- caAGUGCuGGGUG-GCUa--GCG-GCAGUg -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 5436 | 0.67 | 0.539773 |
Target: 5'- --gCGCGACCaCGCCGccCGCUGgCACu -3' miRNA: 3'- caaGUGCUGG-GUGGCuaGCGGCaGUG- -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 4886 | 0.68 | 0.518304 |
Target: 5'- -cUCGCGACgauggUCGCCGAggGCCGgCGCg -3' miRNA: 3'- caAGUGCUG-----GGUGGCUagCGGCaGUG- -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 21309 | 0.68 | 0.507697 |
Target: 5'- aUUCACGggcacGCCCACCG--CGCCGacCGCa -3' miRNA: 3'- cAAGUGC-----UGGGUGGCuaGCGGCa-GUG- -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 24541 | 0.69 | 0.450172 |
Target: 5'- --gCGCGGCCgcaccuucggccgggCGCCcauGAUCGCCGUCAg -3' miRNA: 3'- caaGUGCUGG---------------GUGG---CUAGCGGCAGUg -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 29904 | 0.66 | 0.62794 |
Target: 5'- cUUCACGGCCCACUcccacaUGCCGcgggccUCGCg -3' miRNA: 3'- cAAGUGCUGGGUGGcua---GCGGC------AGUG- -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 33266 | 0.66 | 0.62794 |
Target: 5'- -cUCGCGAaacuucguCCCGCCGca-GCCGgcgCACu -3' miRNA: 3'- caAGUGCU--------GGGUGGCuagCGGCa--GUG- -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 31333 | 0.66 | 0.639077 |
Target: 5'- --cCACGugCCgACCGGgcCGUCGUCGa -3' miRNA: 3'- caaGUGCugGG-UGGCUa-GCGGCAGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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