Results 1 - 20 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28000 | 5' | -55.7 | NC_005887.1 | + | 27630 | 0.66 | 0.650207 |
Target: 5'- -aUCGuCG-CCUGCgCGAUCGCCG-CGCc -3' miRNA: 3'- caAGU-GCuGGGUG-GCUAGCGGCaGUG- -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 18083 | 0.68 | 0.528998 |
Target: 5'- -aUCGCGcuAUCCGgCGAcUCGCCGUgGCu -3' miRNA: 3'- caAGUGC--UGGGUgGCU-AGCGGCAgUG- -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 574 | 0.68 | 0.496136 |
Target: 5'- --aCGCGACCCACgucggcacgaccuCGAUCGUgGUCu- -3' miRNA: 3'- caaGUGCUGGGUG-------------GCUAGCGgCAGug -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 40404 | 1.1 | 0.000612 |
Target: 5'- gGUUCACGACCCACCGAUCGCCGUCACg -3' miRNA: 3'- -CAAGUGCUGGGUGGCUAGCGGCAGUG- -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 7499 | 0.66 | 0.639077 |
Target: 5'- --cCGCGAUCaagUCGGUUGCCGUCGa -3' miRNA: 3'- caaGUGCUGGgu-GGCUAGCGGCAGUg -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 30437 | 0.66 | 0.63685 |
Target: 5'- uGUUCACGccagacgugagcCCCGCCGugaaGUUGCCGgCGCu -3' miRNA: 3'- -CAAGUGCu-----------GGGUGGC----UAGCGGCaGUG- -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 5380 | 0.66 | 0.62794 |
Target: 5'- --gCuCGACCCGCgCGA-CGCCGagACg -3' miRNA: 3'- caaGuGCUGGGUG-GCUaGCGGCagUG- -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 37567 | 0.67 | 0.583529 |
Target: 5'- --gCACGGCCuCGCCGGcUGgCGUCAg -3' miRNA: 3'- caaGUGCUGG-GUGGCUaGCgGCAGUg -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 39856 | 0.67 | 0.561535 |
Target: 5'- --gCACGAgCagGCCGGgcUCGCCGUCGa -3' miRNA: 3'- caaGUGCUgGg-UGGCU--AGCGGCAGUg -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 269 | 0.67 | 0.539773 |
Target: 5'- -aUCGCGcCCCACgCGAcagCGCuCGUCGa -3' miRNA: 3'- caAGUGCuGGGUG-GCUa--GCG-GCAGUg -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 35079 | 0.67 | 0.550621 |
Target: 5'- ---gGCGGCCgggGCCGAugUCGCgGUCGCu -3' miRNA: 3'- caagUGCUGGg--UGGCU--AGCGgCAGUG- -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 16010 | 0.67 | 0.572507 |
Target: 5'- uGUUCGCGcACCCgGCCag-CGCCGgcCACg -3' miRNA: 3'- -CAAGUGC-UGGG-UGGcuaGCGGCa-GUG- -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 5507 | 0.66 | 0.650207 |
Target: 5'- -gUCGCGAUCCAgCGcAagGCUGUCGa -3' miRNA: 3'- caAGUGCUGGGUgGC-UagCGGCAGUg -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 33302 | 0.67 | 0.550621 |
Target: 5'- uGUUCACGGCCgcgaacgggcCGCCGAcaaaCGUCACg -3' miRNA: 3'- -CAAGUGCUGG----------GUGGCUagcgGCAGUG- -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 34951 | 0.66 | 0.650207 |
Target: 5'- ---uGCGACCgUGgCGAUCGUCGUCGg -3' miRNA: 3'- caagUGCUGG-GUgGCUAGCGGCAGUg -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 30797 | 0.67 | 0.572507 |
Target: 5'- --cCGCGA-CCGCCGcgCGCUG-CGCg -3' miRNA: 3'- caaGUGCUgGGUGGCuaGCGGCaGUG- -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 34743 | 0.67 | 0.549533 |
Target: 5'- -gUCGCcGCCCAUCGAUcaaccggCGCCGcUUACg -3' miRNA: 3'- caAGUGcUGGGUGGCUA-------GCGGC-AGUG- -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 24298 | 0.68 | 0.528998 |
Target: 5'- uGUUCACGaucGCCCaAUCG-UCGgCCGUCAg -3' miRNA: 3'- -CAAGUGC---UGGG-UGGCuAGC-GGCAGUg -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 37666 | 0.66 | 0.639077 |
Target: 5'- --gCGCG-CCCAUCaGAcccUCGCCGUCuGCg -3' miRNA: 3'- caaGUGCuGGGUGG-CU---AGCGGCAG-UG- -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 36348 | 0.66 | 0.635736 |
Target: 5'- -cUCAgCGACgCACCGAUCuGCgaaaacaucuugauCGUCGCu -3' miRNA: 3'- caAGU-GCUGgGUGGCUAG-CG--------------GCAGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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