miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28000 5' -55.7 NC_005887.1 + 40404 1.1 0.000612
Target:  5'- gGUUCACGACCCACCGAUCGCCGUCACg -3'
miRNA:   3'- -CAAGUGCUGGGUGGCUAGCGGCAGUG- -5'
28000 5' -55.7 NC_005887.1 + 36530 0.78 0.118212
Target:  5'- cUUCGCGACCCGCgccgacuCGAUCGCCGccgucuggucauUCACg -3'
miRNA:   3'- cAAGUGCUGGGUG-------GCUAGCGGC------------AGUG- -5'
28000 5' -55.7 NC_005887.1 + 8927 0.75 0.180215
Target:  5'- cGUUCGCGAUCCGCgCGAcgcagagCGCCGaCACg -3'
miRNA:   3'- -CAAGUGCUGGGUG-GCUa------GCGGCaGUG- -5'
28000 5' -55.7 NC_005887.1 + 32726 0.74 0.223663
Target:  5'- -aUCGCGAgCCACCGGUCGCgCaUCAg -3'
miRNA:   3'- caAGUGCUgGGUGGCUAGCG-GcAGUg -5'
28000 5' -55.7 NC_005887.1 + 32547 0.73 0.268698
Target:  5'- cGUUCGCGggcccaaucACCCACUcAUCGCCcGUCAUg -3'
miRNA:   3'- -CAAGUGC---------UGGGUGGcUAGCGG-CAGUG- -5'
28000 5' -55.7 NC_005887.1 + 29621 0.73 0.275698
Target:  5'- gGUUCACG-CCCauauaGCUGAucUCGCCGUCGu -3'
miRNA:   3'- -CAAGUGCuGGG-----UGGCU--AGCGGCAGUg -5'
28000 5' -55.7 NC_005887.1 + 809 0.72 0.297573
Target:  5'- cUUCGCGugCgCGCCGAgCGCC-UCGCg -3'
miRNA:   3'- cAAGUGCugG-GUGGCUaGCGGcAGUG- -5'
28000 5' -55.7 NC_005887.1 + 22220 0.71 0.328797
Target:  5'- -aUUACGgugGCCCGCUGAUCGUCGcgugguUCACg -3'
miRNA:   3'- caAGUGC---UGGGUGGCUAGCGGC------AGUG- -5'
28000 5' -55.7 NC_005887.1 + 8404 0.71 0.345294
Target:  5'- --aCGCGacguGCUCGCCGAgCGCCGUCGg -3'
miRNA:   3'- caaGUGC----UGGGUGGCUaGCGGCAGUg -5'
28000 5' -55.7 NC_005887.1 + 23974 0.7 0.380038
Target:  5'- gGUUCGCGAgC-GCCGGcgCGCCGUCuACg -3'
miRNA:   3'- -CAAGUGCUgGgUGGCUa-GCGGCAG-UG- -5'
28000 5' -55.7 NC_005887.1 + 740 0.7 0.398266
Target:  5'- -cUCACgGGCCgCGCCGGcCGCCG-CACc -3'
miRNA:   3'- caAGUG-CUGG-GUGGCUaGCGGCaGUG- -5'
28000 5' -55.7 NC_005887.1 + 19620 0.7 0.406649
Target:  5'- cUUCGCGAgcaguguCCCGCCGAUC-UCGcUCACg -3'
miRNA:   3'- cAAGUGCU-------GGGUGGCUAGcGGC-AGUG- -5'
28000 5' -55.7 NC_005887.1 + 40857 0.7 0.407587
Target:  5'- --gCACGGCCgCGCCGcgcgagCGCCG-CACg -3'
miRNA:   3'- caaGUGCUGG-GUGGCua----GCGGCaGUG- -5'
28000 5' -55.7 NC_005887.1 + 40737 0.7 0.416092
Target:  5'- -gUCGCcGCCCGCgucgaggCGAUCGCCGUuggCGCg -3'
miRNA:   3'- caAGUGcUGGGUG-------GCUAGCGGCA---GUG- -5'
28000 5' -55.7 NC_005887.1 + 13880 0.7 0.417044
Target:  5'- aGUUCGCGAgCUACCGGcUCGUgcgCGUCGg -3'
miRNA:   3'- -CAAGUGCUgGGUGGCU-AGCG---GCAGUg -5'
28000 5' -55.7 NC_005887.1 + 39778 0.69 0.436353
Target:  5'- -gUCGCGGCgCUcgcGCCGAUCGUugcgcgcguCGUCACu -3'
miRNA:   3'- caAGUGCUG-GG---UGGCUAGCG---------GCAGUG- -5'
28000 5' -55.7 NC_005887.1 + 2937 0.69 0.446199
Target:  5'- aUUCGCGAgaUGCCGAaCGCgGUCGCg -3'
miRNA:   3'- cAAGUGCUggGUGGCUaGCGgCAGUG- -5'
28000 5' -55.7 NC_005887.1 + 24541 0.69 0.450172
Target:  5'- --gCGCGGCCgcaccuucggccgggCGCCcauGAUCGCCGUCAg -3'
miRNA:   3'- caaGUGCUGG---------------GUGG---CUAGCGGCAGUg -5'
28000 5' -55.7 NC_005887.1 + 8085 0.69 0.463216
Target:  5'- cGUUCACGaaagcgcgcgcgcaGCUCGCCGcgcUCGCCGagGCg -3'
miRNA:   3'- -CAAGUGC--------------UGGGUGGCu--AGCGGCagUG- -5'
28000 5' -55.7 NC_005887.1 + 37747 0.69 0.466255
Target:  5'- aGUUcCACGAgCCCGCCcaacUUGCCGUCGu -3'
miRNA:   3'- -CAA-GUGCU-GGGUGGcu--AGCGGCAGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.