Results 21 - 40 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28000 | 5' | -55.7 | NC_005887.1 | + | 9844 | 0.69 | 0.466255 |
Target: 5'- --gCGCGGCCaaccugaaCGCCGcgCGCCG-CACa -3' miRNA: 3'- caaGUGCUGG--------GUGGCuaGCGGCaGUG- -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 37747 | 0.69 | 0.466255 |
Target: 5'- aGUUcCACGAgCCCGCCcaacUUGCCGUCGu -3' miRNA: 3'- -CAA-GUGCU-GGGUGGcu--AGCGGCAGUg -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 15566 | 0.68 | 0.476456 |
Target: 5'- --gCGCGACCgcgcucgauuCGCUGAUCGCCGaaGCu -3' miRNA: 3'- caaGUGCUGG----------GUGGCUAGCGGCagUG- -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 12961 | 0.68 | 0.486767 |
Target: 5'- -aUCGCGACCgCGCCGcAUgggccgagggcaUGCCGcUCGCg -3' miRNA: 3'- caAGUGCUGG-GUGGC-UA------------GCGGC-AGUG- -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 574 | 0.68 | 0.496136 |
Target: 5'- --aCGCGACCCACgucggcacgaccuCGAUCGUgGUCu- -3' miRNA: 3'- caaGUGCUGGGUG-------------GCUAGCGgCAGug -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 18238 | 0.68 | 0.507697 |
Target: 5'- -aUCGCcucGGCCaCGCCGggCaCCGUCACg -3' miRNA: 3'- caAGUG---CUGG-GUGGCuaGcGGCAGUG- -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 21309 | 0.68 | 0.507697 |
Target: 5'- aUUCACGggcacGCCCACCG--CGCCGacCGCa -3' miRNA: 3'- cAAGUGC-----UGGGUGGCuaGCGGCa-GUG- -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 4886 | 0.68 | 0.518304 |
Target: 5'- -cUCGCGACgauggUCGCCGAggGCCGgCGCg -3' miRNA: 3'- caAGUGCUG-----GGUGGCUagCGGCaGUG- -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 24298 | 0.68 | 0.528998 |
Target: 5'- uGUUCACGaucGCCCaAUCG-UCGgCCGUCAg -3' miRNA: 3'- -CAAGUGC---UGGG-UGGCuAGC-GGCAGUg -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 18083 | 0.68 | 0.528998 |
Target: 5'- -aUCGCGcuAUCCGgCGAcUCGCCGUgGCu -3' miRNA: 3'- caAGUGC--UGGGUgGCU-AGCGGCAgUG- -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 269 | 0.67 | 0.539773 |
Target: 5'- -aUCGCGcCCCACgCGAcagCGCuCGUCGa -3' miRNA: 3'- caAGUGCuGGGUG-GCUa--GCG-GCAGUg -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 34870 | 0.67 | 0.539773 |
Target: 5'- -aUCGCGGCCU--CGAUCGCCuuGUCGu -3' miRNA: 3'- caAGUGCUGGGugGCUAGCGG--CAGUg -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 5436 | 0.67 | 0.539773 |
Target: 5'- --gCGCGACCaCGCCGccCGCUGgCACu -3' miRNA: 3'- caaGUGCUGG-GUGGCuaGCGGCaGUG- -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 42005 | 0.67 | 0.539773 |
Target: 5'- ---uGCGGCCCACguCGAgugUCGCCGcggCGCg -3' miRNA: 3'- caagUGCUGGGUG--GCU---AGCGGCa--GUG- -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 34743 | 0.67 | 0.549533 |
Target: 5'- -gUCGCcGCCCAUCGAUcaaccggCGCCGcUUACg -3' miRNA: 3'- caAGUGcUGGGUGGCUA-------GCGGC-AGUG- -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 35079 | 0.67 | 0.550621 |
Target: 5'- ---gGCGGCCgggGCCGAugUCGCgGUCGCu -3' miRNA: 3'- caagUGCUGGg--UGGCU--AGCGgCAGUG- -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 33302 | 0.67 | 0.550621 |
Target: 5'- uGUUCACGGCCgcgaacgggcCGCCGAcaaaCGUCACg -3' miRNA: 3'- -CAAGUGCUGG----------GUGGCUagcgGCAGUG- -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 39453 | 0.67 | 0.561535 |
Target: 5'- cGUUCGCGG-CgGCCGAcgugucCGUCGUCGCc -3' miRNA: 3'- -CAAGUGCUgGgUGGCUa-----GCGGCAGUG- -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 11113 | 0.67 | 0.561535 |
Target: 5'- gGUgcgCGCGaaGCUgGCCGAggCGCCGUgGCg -3' miRNA: 3'- -CAa--GUGC--UGGgUGGCUa-GCGGCAgUG- -5' |
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28000 | 5' | -55.7 | NC_005887.1 | + | 39856 | 0.67 | 0.561535 |
Target: 5'- --gCACGAgCagGCCGGgcUCGCCGUCGa -3' miRNA: 3'- caaGUGCUgGg-UGGCU--AGCGGCAGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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