miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28000 5' -55.7 NC_005887.1 + 13880 0.7 0.417044
Target:  5'- aGUUCGCGAgCUACCGGcUCGUgcgCGUCGg -3'
miRNA:   3'- -CAAGUGCUgGGUGGCU-AGCG---GCAGUg -5'
28000 5' -55.7 NC_005887.1 + 14672 0.66 0.594592
Target:  5'- gGUUCgACGcugcCCCGCaCGAUCGggcUCGUCGCg -3'
miRNA:   3'- -CAAG-UGCu---GGGUG-GCUAGC---GGCAGUG- -5'
28000 5' -55.7 NC_005887.1 + 15566 0.68 0.476456
Target:  5'- --gCGCGACCgcgcucgauuCGCUGAUCGCCGaaGCu -3'
miRNA:   3'- caaGUGCUGG----------GUGGCUAGCGGCagUG- -5'
28000 5' -55.7 NC_005887.1 + 16010 0.67 0.572507
Target:  5'- uGUUCGCGcACCCgGCCag-CGCCGgcCACg -3'
miRNA:   3'- -CAAGUGC-UGGG-UGGcuaGCGGCa-GUG- -5'
28000 5' -55.7 NC_005887.1 + 16522 0.66 0.605688
Target:  5'- -aUCGCGuCgCCGCCGG-CGCCGagugggCGCg -3'
miRNA:   3'- caAGUGCuG-GGUGGCUaGCGGCa-----GUG- -5'
28000 5' -55.7 NC_005887.1 + 18083 0.68 0.528998
Target:  5'- -aUCGCGcuAUCCGgCGAcUCGCCGUgGCu -3'
miRNA:   3'- caAGUGC--UGGGUgGCU-AGCGGCAgUG- -5'
28000 5' -55.7 NC_005887.1 + 18238 0.68 0.507697
Target:  5'- -aUCGCcucGGCCaCGCCGggCaCCGUCACg -3'
miRNA:   3'- caAGUG---CUGG-GUGGCuaGcGGCAGUG- -5'
28000 5' -55.7 NC_005887.1 + 19620 0.7 0.406649
Target:  5'- cUUCGCGAgcaguguCCCGCCGAUC-UCGcUCACg -3'
miRNA:   3'- cAAGUGCU-------GGGUGGCUAGcGGC-AGUG- -5'
28000 5' -55.7 NC_005887.1 + 21309 0.68 0.507697
Target:  5'- aUUCACGggcacGCCCACCG--CGCCGacCGCa -3'
miRNA:   3'- cAAGUGC-----UGGGUGGCuaGCGGCa-GUG- -5'
28000 5' -55.7 NC_005887.1 + 22220 0.71 0.328797
Target:  5'- -aUUACGgugGCCCGCUGAUCGUCGcgugguUCACg -3'
miRNA:   3'- caAGUGC---UGGGUGGCUAGCGGC------AGUG- -5'
28000 5' -55.7 NC_005887.1 + 22422 0.67 0.583529
Target:  5'- -cUCGuCGugCUGCUguucugcaugugGAUUGCCGUCACg -3'
miRNA:   3'- caAGU-GCugGGUGG------------CUAGCGGCAGUG- -5'
28000 5' -55.7 NC_005887.1 + 23974 0.7 0.380038
Target:  5'- gGUUCGCGAgC-GCCGGcgCGCCGUCuACg -3'
miRNA:   3'- -CAAGUGCUgGgUGGCUa-GCGGCAG-UG- -5'
28000 5' -55.7 NC_005887.1 + 24298 0.68 0.528998
Target:  5'- uGUUCACGaucGCCCaAUCG-UCGgCCGUCAg -3'
miRNA:   3'- -CAAGUGC---UGGG-UGGCuAGC-GGCAGUg -5'
28000 5' -55.7 NC_005887.1 + 24541 0.69 0.450172
Target:  5'- --gCGCGGCCgcaccuucggccgggCGCCcauGAUCGCCGUCAg -3'
miRNA:   3'- caaGUGCUGG---------------GUGG---CUAGCGGCAGUg -5'
28000 5' -55.7 NC_005887.1 + 27630 0.66 0.650207
Target:  5'- -aUCGuCG-CCUGCgCGAUCGCCG-CGCc -3'
miRNA:   3'- caAGU-GCuGGGUG-GCUAGCGGCaGUG- -5'
28000 5' -55.7 NC_005887.1 + 29387 0.66 0.594592
Target:  5'- --cCuCGGCCCauGCCGG-CGCgGUCGCg -3'
miRNA:   3'- caaGuGCUGGG--UGGCUaGCGgCAGUG- -5'
28000 5' -55.7 NC_005887.1 + 29621 0.73 0.275698
Target:  5'- gGUUCACG-CCCauauaGCUGAucUCGCCGUCGu -3'
miRNA:   3'- -CAAGUGCuGGG-----UGGCU--AGCGGCAGUg -5'
28000 5' -55.7 NC_005887.1 + 29904 0.66 0.62794
Target:  5'- cUUCACGGCCCACUcccacaUGCCGcgggccUCGCg -3'
miRNA:   3'- cAAGUGCUGGGUGGcua---GCGGC------AGUG- -5'
28000 5' -55.7 NC_005887.1 + 30437 0.66 0.63685
Target:  5'- uGUUCACGccagacgugagcCCCGCCGugaaGUUGCCGgCGCu -3'
miRNA:   3'- -CAAGUGCu-----------GGGUGGC----UAGCGGCaGUG- -5'
28000 5' -55.7 NC_005887.1 + 30797 0.67 0.572507
Target:  5'- --cCGCGA-CCGCCGcgCGCUG-CGCg -3'
miRNA:   3'- caaGUGCUgGGUGGCuaGCGGCaGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.