miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28002 5' -62.7 NC_005887.1 + 26794 0.69 0.163515
Target:  5'- -uCGAGCGC-GGUCGCgCgCGCCGaGUCg -3'
miRNA:   3'- acGCUCGCGaCCAGCG-G-GCGGCcUAG- -5'
28002 5' -62.7 NC_005887.1 + 26831 0.67 0.235527
Target:  5'- cGCGuGCGCgagcgGGcgCGUCUGCCGGu-- -3'
miRNA:   3'- aCGCuCGCGa----CCa-GCGGGCGGCCuag -5'
28002 5' -62.7 NC_005887.1 + 27641 0.66 0.267085
Target:  5'- cGCGAucgccGCGCccGGccCGCCCGCCGcGAc- -3'
miRNA:   3'- aCGCU-----CGCGa-CCa-GCGGGCGGC-CUag -5'
28002 5' -62.7 NC_005887.1 + 29441 0.68 0.206621
Target:  5'- cGCGAaaccggcGUGCUGGcUCGCCgUGCC-GAUCa -3'
miRNA:   3'- aCGCU-------CGCGACC-AGCGG-GCGGcCUAG- -5'
28002 5' -62.7 NC_005887.1 + 30333 0.68 0.20185
Target:  5'- uUGCGAGCgGCgug-CGUgCGCCGGAUg -3'
miRNA:   3'- -ACGCUCG-CGaccaGCGgGCGGCCUAg -5'
28002 5' -62.7 NC_005887.1 + 32752 0.66 0.280636
Target:  5'- cGCGuGCGCgccGGcgcgCGCCaugcaGCCGGcUCg -3'
miRNA:   3'- aCGCuCGCGa--CCa---GCGGg----CGGCCuAG- -5'
28002 5' -62.7 NC_005887.1 + 33471 0.66 0.301976
Target:  5'- cGCGAGCGCguacgGcGUCGCgaucucgacgggCgCGCCGGcguUCa -3'
miRNA:   3'- aCGCUCGCGa----C-CAGCG------------G-GCGGCCu--AG- -5'
28002 5' -62.7 NC_005887.1 + 36920 0.74 0.073781
Target:  5'- aGCGGGCGCgUGGUCGC--GCCGG-UCg -3'
miRNA:   3'- aCGCUCGCG-ACCAGCGggCGGCCuAG- -5'
28002 5' -62.7 NC_005887.1 + 36945 0.69 0.186633
Target:  5'- cUGCG-GCGC----CGCCCGCCGGuUCa -3'
miRNA:   3'- -ACGCuCGCGaccaGCGGGCGGCCuAG- -5'
28002 5' -62.7 NC_005887.1 + 36976 0.68 0.207157
Target:  5'- gGCGucGCGCgGGUCgaGCUCGCCGGc-- -3'
miRNA:   3'- aCGCu-CGCGaCCAG--CGGGCGGCCuag -5'
28002 5' -62.7 NC_005887.1 + 37862 0.66 0.287613
Target:  5'- aGCGGGCGC-GGUUGUuaGgCGGAg- -3'
miRNA:   3'- aCGCUCGCGaCCAGCGggCgGCCUag -5'
28002 5' -62.7 NC_005887.1 + 40003 1.09 0.000129
Target:  5'- cUGCGAGCGCUGGUCGCCCGCCGGAUCg -3'
miRNA:   3'- -ACGCUCGCGACCAGCGGGCGGCCUAG- -5'
28002 5' -62.7 NC_005887.1 + 41118 0.67 0.229603
Target:  5'- gUGCuGAGCGCcGcGcagCGCCCGCCaGAUa -3'
miRNA:   3'- -ACG-CUCGCGaC-Ca--GCGGGCGGcCUAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.