Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28003 | 5' | -59.4 | NC_005887.1 | + | 29409 | 0.69 | 0.278265 |
Target: 5'- aGCgUCGCGGCUugcUGCGGCaGGGAcGCGc -3' miRNA: 3'- gCG-AGUGCCGGu--ACGCCG-CCUU-CGUc -5' |
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28003 | 5' | -59.4 | NC_005887.1 | + | 1502 | 0.69 | 0.257847 |
Target: 5'- gCGCggCGCGGCCGUGCGGaacacguaccCGGAccuGCu- -3' miRNA: 3'- -GCGa-GUGCCGGUACGCC----------GCCUu--CGuc -5' |
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28003 | 5' | -59.4 | NC_005887.1 | + | 31044 | 0.7 | 0.244927 |
Target: 5'- gCGCUCGCugccgagccGGCCGcUGCGaGCaGAGGUAGa -3' miRNA: 3'- -GCGAGUG---------CCGGU-ACGC-CGcCUUCGUC- -5' |
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28003 | 5' | -59.4 | NC_005887.1 | + | 41597 | 0.7 | 0.244927 |
Target: 5'- aGCg-GCGGCCcagGUGCGGCGGccGGCGc -3' miRNA: 3'- gCGagUGCCGG---UACGCCGCCu-UCGUc -5' |
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28003 | 5' | -59.4 | NC_005887.1 | + | 17741 | 0.7 | 0.238671 |
Target: 5'- aCGCUCggcACGGCCGcGCGGCuGAuGGCGc -3' miRNA: 3'- -GCGAG---UGCCGGUaCGCCGcCU-UCGUc -5' |
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28003 | 5' | -59.4 | NC_005887.1 | + | 2569 | 0.71 | 0.198549 |
Target: 5'- cCGCcgCAUGGCCGUGa-GCGGcGAGCGGu -3' miRNA: 3'- -GCGa-GUGCCGGUACgcCGCC-UUCGUC- -5' |
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28003 | 5' | -59.4 | NC_005887.1 | + | 19125 | 0.71 | 0.183229 |
Target: 5'- cCGCUCGCGuGCCGU-CGGCGuggcccuuGAAGUAGc -3' miRNA: 3'- -GCGAGUGC-CGGUAcGCCGC--------CUUCGUC- -5' |
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28003 | 5' | -59.4 | NC_005887.1 | + | 7014 | 0.72 | 0.168963 |
Target: 5'- aGCUCGUGGCCGgccgccGCGGCGcGcGGCAGu -3' miRNA: 3'- gCGAGUGCCGGUa-----CGCCGC-CuUCGUC- -5' |
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28003 | 5' | -59.4 | NC_005887.1 | + | 24120 | 0.73 | 0.135679 |
Target: 5'- uGCUgCGCGuGUCGUGCGGUGuGAAGCGc -3' miRNA: 3'- gCGA-GUGC-CGGUACGCCGC-CUUCGUc -5' |
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28003 | 5' | -59.4 | NC_005887.1 | + | 29763 | 0.74 | 0.126229 |
Target: 5'- aGCgUCGCGGCCggGuCGGCGGAcaccaugcgcaugccGGCGGc -3' miRNA: 3'- gCG-AGUGCCGGuaC-GCCGCCU---------------UCGUC- -5' |
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28003 | 5' | -59.4 | NC_005887.1 | + | 12347 | 0.76 | 0.089023 |
Target: 5'- uCGCUCGcCGGCCAgGCGGUGacguGGCAGg -3' miRNA: 3'- -GCGAGU-GCCGGUaCGCCGCcu--UCGUC- -5' |
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28003 | 5' | -59.4 | NC_005887.1 | + | 13381 | 0.76 | 0.086525 |
Target: 5'- gCGCUCGCgcugaaGGCCGgcGCGGCGGAcgucGGCGGc -3' miRNA: 3'- -GCGAGUG------CCGGUa-CGCCGCCU----UCGUC- -5' |
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28003 | 5' | -59.4 | NC_005887.1 | + | 39786 | 1.08 | 0.000314 |
Target: 5'- cCGCUCACGGCCAUGCGGCGGAAGCAGu -3' miRNA: 3'- -GCGAGUGCCGGUACGCCGCCUUCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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