Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28005 | 3' | -53.6 | NC_005887.1 | + | 31887 | 0.66 | 0.665207 |
Target: 5'- gGugGUGGGcgUCGGccAGCCGgUCAGGCAUGc -3' miRNA: 3'- -UugCGUCC--AGCU--UCGGU-AGUUCGUGC- -5' |
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28005 | 3' | -53.6 | NC_005887.1 | + | 17804 | 0.68 | 0.584858 |
Target: 5'- -uCGCAGGggcugaUCGccGAGUCGcUCGAGCACGg -3' miRNA: 3'- uuGCGUCC------AGC--UUCGGU-AGUUCGUGC- -5' |
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28005 | 3' | -53.6 | NC_005887.1 | + | 14607 | 0.68 | 0.59629 |
Target: 5'- cGCGUAcGGccgUCGgcGCCGUCGAGgGCGc -3' miRNA: 3'- uUGCGU-CC---AGCuuCGGUAGUUCgUGC- -5' |
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28005 | 3' | -53.6 | NC_005887.1 | + | 9098 | 0.68 | 0.59629 |
Target: 5'- cAGCGCGGGcacCGgcGCCGUuacucuggucgCAAGCGCa -3' miRNA: 3'- -UUGCGUCCa--GCuuCGGUA-----------GUUCGUGc -5' |
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28005 | 3' | -53.6 | NC_005887.1 | + | 13934 | 0.67 | 0.607755 |
Target: 5'- cGACG-GGGUCGAAGuUCGUCAcggacaagacgGGCGCGc -3' miRNA: 3'- -UUGCgUCCAGCUUC-GGUAGU-----------UCGUGC- -5' |
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28005 | 3' | -53.6 | NC_005887.1 | + | 17398 | 0.67 | 0.619244 |
Target: 5'- cGCGCuGGUCGAucaCGUCGgcGGCAUGg -3' miRNA: 3'- uUGCGuCCAGCUucgGUAGU--UCGUGC- -5' |
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28005 | 3' | -53.6 | NC_005887.1 | + | 20267 | 0.67 | 0.642246 |
Target: 5'- uGCGCuGGUUGAucaacucuGCgUAUCAGGUACGg -3' miRNA: 3'- uUGCGuCCAGCUu-------CG-GUAGUUCGUGC- -5' |
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28005 | 3' | -53.6 | NC_005887.1 | + | 32171 | 0.66 | 0.665207 |
Target: 5'- -cUGCAGGUCGGcgcucagcgaugAGCCAgugCcAGUGCGg -3' miRNA: 3'- uuGCGUCCAGCU------------UCGGUa--GuUCGUGC- -5' |
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28005 | 3' | -53.6 | NC_005887.1 | + | 14985 | 0.66 | 0.665207 |
Target: 5'- cGCGCAGGccgCGcAGGCCG-CAGGCGu- -3' miRNA: 3'- uUGCGUCCa--GC-UUCGGUaGUUCGUgc -5' |
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28005 | 3' | -53.6 | NC_005887.1 | + | 27148 | 0.69 | 0.539654 |
Target: 5'- cACGC-GGcCGAacGGCCA-CGGGCGCGg -3' miRNA: 3'- uUGCGuCCaGCU--UCGGUaGUUCGUGC- -5' |
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28005 | 3' | -53.6 | NC_005887.1 | + | 32788 | 0.69 | 0.517487 |
Target: 5'- uGCGCAGGaUCGGcgcgcGCCGcuUCAcgGGCACGa -3' miRNA: 3'- uUGCGUCC-AGCUu----CGGU--AGU--UCGUGC- -5' |
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28005 | 3' | -53.6 | NC_005887.1 | + | 2228 | 0.71 | 0.423048 |
Target: 5'- uGGCGCAuccGGUCgGAAGUCGUCGcgacgAGCAUGg -3' miRNA: 3'- -UUGCGU---CCAG-CUUCGGUAGU-----UCGUGC- -5' |
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28005 | 3' | -53.6 | NC_005887.1 | + | 35054 | 0.75 | 0.228705 |
Target: 5'- uACGCgAGGUCGcuGCCGUCGucggcgGGCGCGa -3' miRNA: 3'- uUGCG-UCCAGCuuCGGUAGU------UCGUGC- -5' |
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28005 | 3' | -53.6 | NC_005887.1 | + | 14313 | 0.74 | 0.261866 |
Target: 5'- aAGCGCAGGcCGAcGCCGaCAAGCAgGu -3' miRNA: 3'- -UUGCGUCCaGCUuCGGUaGUUCGUgC- -5' |
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28005 | 3' | -53.6 | NC_005887.1 | + | 14526 | 0.72 | 0.339719 |
Target: 5'- -uUGCAGG-CGcGGCCGUCGgcGGCGCGu -3' miRNA: 3'- uuGCGUCCaGCuUCGGUAGU--UCGUGC- -5' |
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28005 | 3' | -53.6 | NC_005887.1 | + | 5026 | 0.72 | 0.348367 |
Target: 5'- aGGCGCAGacCGAAGCCAacgaAGGCACGg -3' miRNA: 3'- -UUGCGUCcaGCUUCGGUag--UUCGUGC- -5' |
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28005 | 3' | -53.6 | NC_005887.1 | + | 16220 | 0.72 | 0.36613 |
Target: 5'- cACGCAGGUcaCGAucgauacgccGGCCggCGAGCGCa -3' miRNA: 3'- uUGCGUCCA--GCU----------UCGGuaGUUCGUGc -5' |
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28005 | 3' | -53.6 | NC_005887.1 | + | 24436 | 0.72 | 0.36613 |
Target: 5'- cACGCAGGUCGcGAGCaggacacgcagCAUCAGGC-CGu -3' miRNA: 3'- uUGCGUCCAGC-UUCG-----------GUAGUUCGuGC- -5' |
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28005 | 3' | -53.6 | NC_005887.1 | + | 15380 | 0.71 | 0.384508 |
Target: 5'- --aGCAGGUCGAcGCCGcgcugaUCGcGCGCGg -3' miRNA: 3'- uugCGUCCAGCUuCGGU------AGUuCGUGC- -5' |
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28005 | 3' | -53.6 | NC_005887.1 | + | 30241 | 0.71 | 0.397731 |
Target: 5'- -uCGaCAGGUCGGAcacguacaggcgcuuGCCGUCcGGCGCGa -3' miRNA: 3'- uuGC-GUCCAGCUU---------------CGGUAGuUCGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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