miRNA display CGI


Results 21 - 40 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28005 3' -53.6 NC_005887.1 + 5026 0.72 0.348367
Target:  5'- aGGCGCAGacCGAAGCCAacgaAGGCACGg -3'
miRNA:   3'- -UUGCGUCcaGCUUCGGUag--UUCGUGC- -5'
28005 3' -53.6 NC_005887.1 + 16220 0.72 0.36613
Target:  5'- cACGCAGGUcaCGAucgauacgccGGCCggCGAGCGCa -3'
miRNA:   3'- uUGCGUCCA--GCU----------UCGGuaGUUCGUGc -5'
28005 3' -53.6 NC_005887.1 + 24436 0.72 0.36613
Target:  5'- cACGCAGGUCGcGAGCaggacacgcagCAUCAGGC-CGu -3'
miRNA:   3'- uUGCGUCCAGC-UUCG-----------GUAGUUCGuGC- -5'
28005 3' -53.6 NC_005887.1 + 30241 0.71 0.397731
Target:  5'- -uCGaCAGGUCGGAcacguacaggcgcuuGCCGUCcGGCGCGa -3'
miRNA:   3'- uuGC-GUCCAGCUU---------------CGGUAGuUCGUGC- -5'
28005 3' -53.6 NC_005887.1 + 2228 0.71 0.423048
Target:  5'- uGGCGCAuccGGUCgGAAGUCGUCGcgacgAGCAUGg -3'
miRNA:   3'- -UUGCGU---CCAG-CUUCGGUAGU-----UCGUGC- -5'
28005 3' -53.6 NC_005887.1 + 32788 0.69 0.517487
Target:  5'- uGCGCAGGaUCGGcgcgcGCCGcuUCAcgGGCACGa -3'
miRNA:   3'- uUGCGUCC-AGCUu----CGGU--AGU--UCGUGC- -5'
28005 3' -53.6 NC_005887.1 + 27148 0.69 0.539654
Target:  5'- cACGC-GGcCGAacGGCCA-CGGGCGCGg -3'
miRNA:   3'- uUGCGuCCaGCU--UCGGUaGUUCGUGC- -5'
28005 3' -53.6 NC_005887.1 + 17804 0.68 0.584858
Target:  5'- -uCGCAGGggcugaUCGccGAGUCGcUCGAGCACGg -3'
miRNA:   3'- uuGCGUCC------AGC--UUCGGU-AGUUCGUGC- -5'
28005 3' -53.6 NC_005887.1 + 14607 0.68 0.59629
Target:  5'- cGCGUAcGGccgUCGgcGCCGUCGAGgGCGc -3'
miRNA:   3'- uUGCGU-CC---AGCuuCGGUAGUUCgUGC- -5'
28005 3' -53.6 NC_005887.1 + 15380 0.71 0.384508
Target:  5'- --aGCAGGUCGAcGCCGcgcugaUCGcGCGCGg -3'
miRNA:   3'- uugCGUCCAGCUuCGGU------AGUuCGUGC- -5'
28005 3' -53.6 NC_005887.1 + 12252 0.69 0.528527
Target:  5'- cGGCGUAGccGUCGAAGCgGUCGacaAGUACa -3'
miRNA:   3'- -UUGCGUC--CAGCUUCGgUAGU---UCGUGc -5'
28005 3' -53.6 NC_005887.1 + 8430 0.69 0.52742
Target:  5'- --gGCAGGUCGAcgucgaaGGCUucacuccCGAGCACGa -3'
miRNA:   3'- uugCGUCCAGCU-------UCGGua-----GUUCGUGC- -5'
28005 3' -53.6 NC_005887.1 + 356 0.69 0.517487
Target:  5'- cGACGUGGGcCGcAGGCCGUgcugcugauaggCGAGCGCGc -3'
miRNA:   3'- -UUGCGUCCaGC-UUCGGUA------------GUUCGUGC- -5'
28005 3' -53.6 NC_005887.1 + 34840 0.69 0.516388
Target:  5'- uGACGCucgGGGUCGu-GCCGccgaggguguaguUCAAGCGCa -3'
miRNA:   3'- -UUGCG---UCCAGCuuCGGU-------------AGUUCGUGc -5'
28005 3' -53.6 NC_005887.1 + 15258 0.69 0.50654
Target:  5'- cGCGCGuGUCGAaccAGCgCAgCAAGCGCGg -3'
miRNA:   3'- uUGCGUcCAGCU---UCG-GUaGUUCGUGC- -5'
28005 3' -53.6 NC_005887.1 + 41449 0.7 0.463813
Target:  5'- cGACGCGGaUCGAAGCCGaggccgccugacUCGuccggcGGCGCGg -3'
miRNA:   3'- -UUGCGUCcAGCUUCGGU------------AGU------UCGUGC- -5'
28005 3' -53.6 NC_005887.1 + 6340 0.7 0.433039
Target:  5'- uGACGCugcuGGUUGAAcaacggcuGuCCAUCGAGCACa -3'
miRNA:   3'- -UUGCGu---CCAGCUU--------C-GGUAGUUCGUGc -5'
28005 3' -53.6 NC_005887.1 + 19576 0.72 0.357171
Target:  5'- cGCGcCGGcGUCG-AGCCAaCGAGCACGu -3'
miRNA:   3'- uUGC-GUC-CAGCuUCGGUaGUUCGUGC- -5'
28005 3' -53.6 NC_005887.1 + 40659 0.72 0.327874
Target:  5'- cGCGCAGcuugcgcucgugcUCGggGCgAUCGAGCGCGa -3'
miRNA:   3'- uUGCGUCc------------AGCuuCGgUAGUUCGUGC- -5'
28005 3' -53.6 NC_005887.1 + 1083 0.73 0.313907
Target:  5'- uGCGCAGGUCGAcggcGCCAUugccgacgccgagCAGGUGCGu -3'
miRNA:   3'- uUGCGUCCAGCUu---CGGUA-------------GUUCGUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.