miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28005 3' -53.6 NC_005887.1 + 19576 0.72 0.357171
Target:  5'- cGCGcCGGcGUCG-AGCCAaCGAGCACGu -3'
miRNA:   3'- uUGC-GUC-CAGCuUCGGUaGUUCGUGC- -5'
28005 3' -53.6 NC_005887.1 + 26446 0.82 0.073839
Target:  5'- gAACGCAGGUCGGccAGCUgcgcGUCGAGCGCa -3'
miRNA:   3'- -UUGCGUCCAGCU--UCGG----UAGUUCGUGc -5'
28005 3' -53.6 NC_005887.1 + 8430 0.69 0.52742
Target:  5'- --gGCAGGUCGAcgucgaaGGCUucacuccCGAGCACGa -3'
miRNA:   3'- uugCGUCCAGCU-------UCGGua-----GUUCGUGC- -5'
28005 3' -53.6 NC_005887.1 + 15258 0.69 0.50654
Target:  5'- cGCGCGuGUCGAaccAGCgCAgCAAGCGCGg -3'
miRNA:   3'- uUGCGUcCAGCU---UCG-GUaGUUCGUGC- -5'
28005 3' -53.6 NC_005887.1 + 40659 0.72 0.327874
Target:  5'- cGCGCAGcuugcgcucgugcUCGggGCgAUCGAGCGCGa -3'
miRNA:   3'- uUGCGUCc------------AGCuuCGgUAGUUCGUGC- -5'
28005 3' -53.6 NC_005887.1 + 17778 0.68 0.561003
Target:  5'- uGCGCAGGUgUGAAGCUgacggcgAUCAugGGCGCc -3'
miRNA:   3'- uUGCGUCCA-GCUUCGG-------UAGU--UCGUGc -5'
28005 3' -53.6 NC_005887.1 + 26321 0.66 0.710625
Target:  5'- -cUGCAGGUUcAGGCCGUgGccGGCGCu -3'
miRNA:   3'- uuGCGUCCAGcUUCGGUAgU--UCGUGc -5'
28005 3' -53.6 NC_005887.1 + 9098 0.68 0.59629
Target:  5'- cAGCGCGGGcacCGgcGCCGUuacucuggucgCAAGCGCa -3'
miRNA:   3'- -UUGCGUCCa--GCuuCGGUA-----------GUUCGUGc -5'
28005 3' -53.6 NC_005887.1 + 14313 0.74 0.261866
Target:  5'- aAGCGCAGGcCGAcGCCGaCAAGCAgGu -3'
miRNA:   3'- -UUGCGUCCaGCUuCGGUaGUUCGUgC- -5'
28005 3' -53.6 NC_005887.1 + 14607 0.68 0.59629
Target:  5'- cGCGUAcGGccgUCGgcGCCGUCGAGgGCGc -3'
miRNA:   3'- uUGCGU-CC---AGCuuCGGUAGUUCgUGC- -5'
28005 3' -53.6 NC_005887.1 + 17804 0.68 0.584858
Target:  5'- -uCGCAGGggcugaUCGccGAGUCGcUCGAGCACGg -3'
miRNA:   3'- uuGCGUCC------AGC--UUCGGU-AGUUCGUGC- -5'
28005 3' -53.6 NC_005887.1 + 27148 0.69 0.539654
Target:  5'- cACGC-GGcCGAacGGCCA-CGGGCGCGg -3'
miRNA:   3'- uUGCGuCCaGCU--UCGGUaGUUCGUGC- -5'
28005 3' -53.6 NC_005887.1 + 24436 0.72 0.36613
Target:  5'- cACGCAGGUCGcGAGCaggacacgcagCAUCAGGC-CGu -3'
miRNA:   3'- uUGCGUCCAGC-UUCG-----------GUAGUUCGuGC- -5'
28005 3' -53.6 NC_005887.1 + 40330 0.66 0.665207
Target:  5'- aGACGUucgccGcCGAaauggacuGGCCGUCGAGCGCGg -3'
miRNA:   3'- -UUGCGuc---CaGCU--------UCGGUAGUUCGUGC- -5'
28005 3' -53.6 NC_005887.1 + 41745 0.66 0.665207
Target:  5'- cGGCGCGcgggcucuGGUCGAAGaCCAcgaUCGAGguCGu -3'
miRNA:   3'- -UUGCGU--------CCAGCUUC-GGU---AGUUCguGC- -5'
28005 3' -53.6 NC_005887.1 + 7216 0.66 0.688034
Target:  5'- uGCGCAGG-CGcuGUCggcGUCGGGCGCa -3'
miRNA:   3'- uUGCGUCCaGCuuCGG---UAGUUCGUGc -5'
28005 3' -53.6 NC_005887.1 + 16220 0.72 0.36613
Target:  5'- cACGCAGGUcaCGAucgauacgccGGCCggCGAGCGCa -3'
miRNA:   3'- uUGCGUCCA--GCU----------UCGGuaGUUCGUGc -5'
28005 3' -53.6 NC_005887.1 + 30865 0.66 0.699365
Target:  5'- uGCGCuGGUCcuGAuGCCA--GAGCGCGa -3'
miRNA:   3'- uUGCGuCCAG--CUuCGGUagUUCGUGC- -5'
28005 3' -53.6 NC_005887.1 + 35143 0.66 0.721801
Target:  5'- cGGCGCcacGGaCGGgcGGCCGUCAcgcuGCACGa -3'
miRNA:   3'- -UUGCGu--CCaGCU--UCGGUAGUu---CGUGC- -5'
28005 3' -53.6 NC_005887.1 + 4532 0.66 0.710625
Target:  5'- cGGCGUcccGGUCGAGGCgAU-GAGCACc -3'
miRNA:   3'- -UUGCGu--CCAGCUUCGgUAgUUCGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.