miRNA display CGI


Results 41 - 56 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28005 3' -53.6 NC_005887.1 + 35054 0.75 0.228705
Target:  5'- uACGCgAGGUCGcuGCCGUCGucggcgGGCGCGa -3'
miRNA:   3'- uUGCG-UCCAGCuuCGGUAGU------UCGUGC- -5'
28005 3' -53.6 NC_005887.1 + 14607 0.68 0.59629
Target:  5'- cGCGUAcGGccgUCGgcGCCGUCGAGgGCGc -3'
miRNA:   3'- uUGCGU-CC---AGCuuCGGUAGUUCgUGC- -5'
28005 3' -53.6 NC_005887.1 + 9098 0.68 0.59629
Target:  5'- cAGCGCGGGcacCGgcGCCGUuacucuggucgCAAGCGCa -3'
miRNA:   3'- -UUGCGUCCa--GCuuCGGUA-----------GUUCGUGc -5'
28005 3' -53.6 NC_005887.1 + 13934 0.67 0.607755
Target:  5'- cGACG-GGGUCGAAGuUCGUCAcggacaagacgGGCGCGc -3'
miRNA:   3'- -UUGCgUCCAGCUUC-GGUAGU-----------UCGUGC- -5'
28005 3' -53.6 NC_005887.1 + 4532 0.66 0.710625
Target:  5'- cGGCGUcccGGUCGAGGCgAU-GAGCACc -3'
miRNA:   3'- -UUGCGu--CCAGCUUCGgUAgUUCGUGc -5'
28005 3' -53.6 NC_005887.1 + 26321 0.66 0.710625
Target:  5'- -cUGCAGGUUcAGGCCGUgGccGGCGCu -3'
miRNA:   3'- uuGCGUCCAGcUUCGGUAgU--UCGUGc -5'
28005 3' -53.6 NC_005887.1 + 30865 0.66 0.699365
Target:  5'- uGCGCuGGUCcuGAuGCCA--GAGCGCGa -3'
miRNA:   3'- uUGCGuCCAG--CUuCGGUagUUCGUGC- -5'
28005 3' -53.6 NC_005887.1 + 7216 0.66 0.688034
Target:  5'- uGCGCAGG-CGcuGUCggcGUCGGGCGCa -3'
miRNA:   3'- uUGCGUCCaGCuuCGG---UAGUUCGUGc -5'
28005 3' -53.6 NC_005887.1 + 41745 0.66 0.665207
Target:  5'- cGGCGCGcgggcucuGGUCGAAGaCCAcgaUCGAGguCGu -3'
miRNA:   3'- -UUGCGU--------CCAGCUUC-GGU---AGUUCguGC- -5'
28005 3' -53.6 NC_005887.1 + 40330 0.66 0.665207
Target:  5'- aGACGUucgccGcCGAaauggacuGGCCGUCGAGCGCGg -3'
miRNA:   3'- -UUGCGuc---CaGCU--------UCGGUAGUUCGUGC- -5'
28005 3' -53.6 NC_005887.1 + 31887 0.66 0.665207
Target:  5'- gGugGUGGGcgUCGGccAGCCGgUCAGGCAUGc -3'
miRNA:   3'- -UugCGUCC--AGCU--UCGGU-AGUUCGUGC- -5'
28005 3' -53.6 NC_005887.1 + 14985 0.66 0.665207
Target:  5'- cGCGCAGGccgCGcAGGCCG-CAGGCGu- -3'
miRNA:   3'- uUGCGUCCa--GC-UUCGGUaGUUCGUgc -5'
28005 3' -53.6 NC_005887.1 + 32171 0.66 0.665207
Target:  5'- -cUGCAGGUCGGcgcucagcgaugAGCCAgugCcAGUGCGg -3'
miRNA:   3'- uuGCGUCCAGCU------------UCGGUa--GuUCGUGC- -5'
28005 3' -53.6 NC_005887.1 + 20267 0.67 0.642246
Target:  5'- uGCGCuGGUUGAucaacucuGCgUAUCAGGUACGg -3'
miRNA:   3'- uUGCGuCCAGCUu-------CG-GUAGUUCGUGC- -5'
28005 3' -53.6 NC_005887.1 + 17398 0.67 0.619244
Target:  5'- cGCGCuGGUCGAucaCGUCGgcGGCAUGg -3'
miRNA:   3'- uUGCGuCCAGCUucgGUAGU--UCGUGC- -5'
28005 3' -53.6 NC_005887.1 + 36981 0.83 0.063499
Target:  5'- cGCGCGGGUCGAGcucGCCggCGAGCACGc -3'
miRNA:   3'- uUGCGUCCAGCUU---CGGuaGUUCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.