Results 21 - 40 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28005 | 3' | -53.6 | NC_005887.1 | + | 27148 | 0.69 | 0.539654 |
Target: 5'- cACGC-GGcCGAacGGCCA-CGGGCGCGg -3' miRNA: 3'- uUGCGuCCaGCU--UCGGUaGUUCGUGC- -5' |
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28005 | 3' | -53.6 | NC_005887.1 | + | 26502 | 0.66 | 0.665207 |
Target: 5'- cGCGCGGGcguuucccUCGAucgcGCCGcgCAAGCGCu -3' miRNA: 3'- uUGCGUCC--------AGCUu---CGGUa-GUUCGUGc -5' |
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28005 | 3' | -53.6 | NC_005887.1 | + | 26446 | 0.82 | 0.073839 |
Target: 5'- gAACGCAGGUCGGccAGCUgcgcGUCGAGCGCa -3' miRNA: 3'- -UUGCGUCCAGCU--UCGG----UAGUUCGUGc -5' |
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28005 | 3' | -53.6 | NC_005887.1 | + | 26321 | 0.66 | 0.710625 |
Target: 5'- -cUGCAGGUUcAGGCCGUgGccGGCGCu -3' miRNA: 3'- uuGCGUCCAGcUUCGGUAgU--UCGUGc -5' |
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28005 | 3' | -53.6 | NC_005887.1 | + | 25892 | 0.66 | 0.699365 |
Target: 5'- cGCGC-GGUCGAGcgcauGCCcgCGcGCACGc -3' miRNA: 3'- uUGCGuCCAGCUU-----CGGuaGUuCGUGC- -5' |
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28005 | 3' | -53.6 | NC_005887.1 | + | 24436 | 0.72 | 0.36613 |
Target: 5'- cACGCAGGUCGcGAGCaggacacgcagCAUCAGGC-CGu -3' miRNA: 3'- uUGCGUCCAGC-UUCG-----------GUAGUUCGuGC- -5' |
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28005 | 3' | -53.6 | NC_005887.1 | + | 23951 | 0.66 | 0.721801 |
Target: 5'- cGGCGCcgcGG-CGuAGGCCAUCGGGUucGCGa -3' miRNA: 3'- -UUGCGu--CCaGC-UUCGGUAGUUCG--UGC- -5' |
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28005 | 3' | -53.6 | NC_005887.1 | + | 20267 | 0.67 | 0.642246 |
Target: 5'- uGCGCuGGUUGAucaacucuGCgUAUCAGGUACGg -3' miRNA: 3'- uUGCGuCCAGCUu-------CG-GUAGUUCGUGC- -5' |
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28005 | 3' | -53.6 | NC_005887.1 | + | 19576 | 0.72 | 0.357171 |
Target: 5'- cGCGcCGGcGUCG-AGCCAaCGAGCACGu -3' miRNA: 3'- uUGC-GUC-CAGCuUCGGUaGUUCGUGC- -5' |
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28005 | 3' | -53.6 | NC_005887.1 | + | 19206 | 0.66 | 0.676643 |
Target: 5'- cACGgGGGUCGAGGaUCGUCAcGC-CGu -3' miRNA: 3'- uUGCgUCCAGCUUC-GGUAGUuCGuGC- -5' |
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28005 | 3' | -53.6 | NC_005887.1 | + | 17804 | 0.68 | 0.584858 |
Target: 5'- -uCGCAGGggcugaUCGccGAGUCGcUCGAGCACGg -3' miRNA: 3'- uuGCGUCC------AGC--UUCGGU-AGUUCGUGC- -5' |
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28005 | 3' | -53.6 | NC_005887.1 | + | 17778 | 0.68 | 0.561003 |
Target: 5'- uGCGCAGGUgUGAAGCUgacggcgAUCAugGGCGCc -3' miRNA: 3'- uUGCGUCCA-GCUUCGG-------UAGU--UCGUGc -5' |
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28005 | 3' | -53.6 | NC_005887.1 | + | 17540 | 0.68 | 0.573469 |
Target: 5'- uGCGCAGGacaUCGAgaAGCCGcugUCGgccAGCACa -3' miRNA: 3'- uUGCGUCC---AGCU--UCGGU---AGU---UCGUGc -5' |
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28005 | 3' | -53.6 | NC_005887.1 | + | 17398 | 0.67 | 0.619244 |
Target: 5'- cGCGCuGGUCGAucaCGUCGgcGGCAUGg -3' miRNA: 3'- uUGCGuCCAGCUucgGUAGU--UCGUGC- -5' |
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28005 | 3' | -53.6 | NC_005887.1 | + | 16220 | 0.72 | 0.36613 |
Target: 5'- cACGCAGGUcaCGAucgauacgccGGCCggCGAGCGCa -3' miRNA: 3'- uUGCGUCCA--GCU----------UCGGuaGUUCGUGc -5' |
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28005 | 3' | -53.6 | NC_005887.1 | + | 15380 | 0.71 | 0.384508 |
Target: 5'- --aGCAGGUCGAcGCCGcgcugaUCGcGCGCGg -3' miRNA: 3'- uugCGUCCAGCUuCGGU------AGUuCGUGC- -5' |
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28005 | 3' | -53.6 | NC_005887.1 | + | 15258 | 0.69 | 0.50654 |
Target: 5'- cGCGCGuGUCGAaccAGCgCAgCAAGCGCGg -3' miRNA: 3'- uUGCGUcCAGCU---UCG-GUaGUUCGUGC- -5' |
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28005 | 3' | -53.6 | NC_005887.1 | + | 15024 | 0.67 | 0.607755 |
Target: 5'- uGGCGCA-GUCGAcguGGCCGgaCGAGUGCGa -3' miRNA: 3'- -UUGCGUcCAGCU---UCGGUa-GUUCGUGC- -5' |
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28005 | 3' | -53.6 | NC_005887.1 | + | 14985 | 0.66 | 0.665207 |
Target: 5'- cGCGCAGGccgCGcAGGCCG-CAGGCGu- -3' miRNA: 3'- uUGCGUCCa--GC-UUCGGUaGUUCGUgc -5' |
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28005 | 3' | -53.6 | NC_005887.1 | + | 14607 | 0.68 | 0.59629 |
Target: 5'- cGCGUAcGGccgUCGgcGCCGUCGAGgGCGc -3' miRNA: 3'- uUGCGU-CC---AGCuuCGGUAGUUCgUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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