miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28005 5' -58.5 NC_005887.1 + 23240 0.8 0.053867
Target:  5'- -aCGCGAGCGGCGGCG-GUCGGCGc- -3'
miRNA:   3'- aaGCGCUCGUUGCCGCcCAGCUGCuc -5'
28005 5' -58.5 NC_005887.1 + 24941 0.66 0.459868
Target:  5'- aUCGCGAcGCGuGCGcGCGGGcCGccuugcgcgcggccGCGAGg -3'
miRNA:   3'- aAGCGCU-CGU-UGC-CGCCCaGC--------------UGCUC- -5'
28005 5' -58.5 NC_005887.1 + 28572 0.68 0.360792
Target:  5'- gUCGCcgcccGCugcGCGGaCGcGGUCGACGAGg -3'
miRNA:   3'- aAGCGcu---CGu--UGCC-GC-CCAGCUGCUC- -5'
28005 5' -58.5 NC_005887.1 + 29757 0.77 0.093024
Target:  5'- -aCGcCGAGCGucGCGGcCGGGUCGGCGGa -3'
miRNA:   3'- aaGC-GCUCGU--UGCC-GCCCAGCUGCUc -5'
28005 5' -58.5 NC_005887.1 + 33470 0.68 0.343996
Target:  5'- -cCGCGAGCGcguACGGCGucgcgaucUCGACGGGc -3'
miRNA:   3'- aaGCGCUCGU---UGCCGCcc------AGCUGCUC- -5'
28005 5' -58.5 NC_005887.1 + 33612 0.71 0.242383
Target:  5'- -gCGCGAGC-GCGGCGuGGUCuuCGAa -3'
miRNA:   3'- aaGCGCUCGuUGCCGC-CCAGcuGCUc -5'
28005 5' -58.5 NC_005887.1 + 34686 0.66 0.483003
Target:  5'- gUUGuCGAGCAGCaGCGGG-CGGCc-- -3'
miRNA:   3'- aAGC-GCUCGUUGcCGCCCaGCUGcuc -5'
28005 5' -58.5 NC_005887.1 + 34935 0.67 0.405222
Target:  5'- -aCGa-GGCGGCGGCGGGUgCGACc-- -3'
miRNA:   3'- aaGCgcUCGUUGCCGCCCA-GCUGcuc -5'
28005 5' -58.5 NC_005887.1 + 37888 0.68 0.378152
Target:  5'- cUUCGCG-GCAGC--CGGGUCGaacuGCGAGa -3'
miRNA:   3'- -AAGCGCuCGUUGccGCCCAGC----UGCUC- -5'
28005 5' -58.5 NC_005887.1 + 38388 1.05 0.000667
Target:  5'- gUUCGCGAGCAACGGCGGGUCGACGAGc -3'
miRNA:   3'- -AAGCGCUCGUUGCCGCCCAGCUGCUC- -5'
28005 5' -58.5 NC_005887.1 + 38640 0.68 0.335812
Target:  5'- aUCGCGGuCGGCGcGCGGcUCGACGGc -3'
miRNA:   3'- aAGCGCUcGUUGC-CGCCcAGCUGCUc -5'
28005 5' -58.5 NC_005887.1 + 39104 0.69 0.289714
Target:  5'- gUUGCGcAGCGcgaGCGGCGcGGUCGAauCGAa -3'
miRNA:   3'- aAGCGC-UCGU---UGCCGC-CCAGCU--GCUc -5'
28005 5' -58.5 NC_005887.1 + 39430 0.66 0.472874
Target:  5'- cUUGCGcAGCuugGCGGCGGcGUCGuucGCGGc -3'
miRNA:   3'- aAGCGC-UCGu--UGCCGCC-CAGC---UGCUc -5'
28005 5' -58.5 NC_005887.1 + 41676 0.69 0.297039
Target:  5'- cUCgGCGAGCAGCaGCaccuGGUCGGCGGu -3'
miRNA:   3'- aAG-CGCUCGUUGcCGc---CCAGCUGCUc -5'
28005 5' -58.5 NC_005887.1 + 41928 0.66 0.443153
Target:  5'- --aGCGcAGCAACaGCGGG-CGGCGcGg -3'
miRNA:   3'- aagCGC-UCGUUGcCGCCCaGCUGCuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.