Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28005 | 5' | -58.5 | NC_005887.1 | + | 16477 | 0.69 | 0.304506 |
Target: 5'- -cCGCGcGGCAGgaucCGGCGGGcuggUCGGCGAu -3' miRNA: 3'- aaGCGC-UCGUU----GCCGCCC----AGCUGCUc -5' |
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28005 | 5' | -58.5 | NC_005887.1 | + | 15619 | 0.68 | 0.352324 |
Target: 5'- gUCGCGcAGCAgGCGGcCGGGcUCGcCGAu -3' miRNA: 3'- aAGCGC-UCGU-UGCC-GCCC-AGCuGCUc -5' |
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28005 | 5' | -58.5 | NC_005887.1 | + | 15405 | 0.74 | 0.145654 |
Target: 5'- -gCGCGGGCAGCGGaucGUCGACGAc -3' miRNA: 3'- aaGCGCUCGUUGCCgccCAGCUGCUc -5' |
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28005 | 5' | -58.5 | NC_005887.1 | + | 13912 | 0.68 | 0.360792 |
Target: 5'- aUUCGUG-GC-ACGuacGCGGuGUCGACGGGg -3' miRNA: 3'- -AAGCGCuCGuUGC---CGCC-CAGCUGCUC- -5' |
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28005 | 5' | -58.5 | NC_005887.1 | + | 13664 | 0.66 | 0.481985 |
Target: 5'- uUUCGCGGGCGugAUcGCGGGUugucgucUGGCGAa -3' miRNA: 3'- -AAGCGCUCGU--UGcCGCCCA-------GCUGCUc -5' |
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28005 | 5' | -58.5 | NC_005887.1 | + | 13384 | 0.68 | 0.378152 |
Target: 5'- cUCGCGcugaaggccGGC-GCGGCGGacGUCGGCGGc -3' miRNA: 3'- aAGCGC---------UCGuUGCCGCC--CAGCUGCUc -5' |
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28005 | 5' | -58.5 | NC_005887.1 | + | 12648 | 0.68 | 0.352324 |
Target: 5'- -cCGCaGGUuACGaGUGGGUCGGCGAu -3' miRNA: 3'- aaGCGcUCGuUGC-CGCCCAGCUGCUc -5' |
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28005 | 5' | -58.5 | NC_005887.1 | + | 12144 | 0.68 | 0.352324 |
Target: 5'- -cCGCGAcGCGGCguGGCuGGcCGGCGAGa -3' miRNA: 3'- aaGCGCU-CGUUG--CCGcCCaGCUGCUC- -5' |
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28005 | 5' | -58.5 | NC_005887.1 | + | 10221 | 0.67 | 0.414513 |
Target: 5'- gUUGCGAGCAGCGcu--GUCGACGAc -3' miRNA: 3'- aAGCGCUCGUUGCcgccCAGCUGCUc -5' |
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28005 | 5' | -58.5 | NC_005887.1 | + | 10117 | 0.69 | 0.304506 |
Target: 5'- -cCGCGgcaGGCAAaggUGGCGGGUuugaUGACGAGc -3' miRNA: 3'- aaGCGC---UCGUU---GCCGCCCA----GCUGCUC- -5' |
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28005 | 5' | -58.5 | NC_005887.1 | + | 9077 | 0.66 | 0.461857 |
Target: 5'- -gCGCcGGCuGCGGCGGGaCGaaguuucGCGAGa -3' miRNA: 3'- aaGCGcUCGuUGCCGCCCaGC-------UGCUC- -5' |
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28005 | 5' | -58.5 | NC_005887.1 | + | 8414 | 0.71 | 0.230097 |
Target: 5'- cUCGcCGAGCGccguCGGCaGGUCGACGu- -3' miRNA: 3'- aAGC-GCUCGUu---GCCGcCCAGCUGCuc -5' |
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28005 | 5' | -58.5 | NC_005887.1 | + | 4741 | 0.74 | 0.153888 |
Target: 5'- -cCGCGAGCAAuacCGGCGGuGcuuuugCGACGAGc -3' miRNA: 3'- aaGCGCUCGUU---GCCGCC-Ca-----GCUGCUC- -5' |
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28005 | 5' | -58.5 | NC_005887.1 | + | 2449 | 0.69 | 0.312117 |
Target: 5'- cUCGCuGcGCuACGGCGccGUCGACGAGg -3' miRNA: 3'- aAGCG-CuCGuUGCCGCc-CAGCUGCUC- -5' |
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28005 | 5' | -58.5 | NC_005887.1 | + | 1984 | 0.71 | 0.236173 |
Target: 5'- cUCGCGcGCGACGGCGGcacggccgcGcUCGACGGc -3' miRNA: 3'- aAGCGCuCGUUGCCGCC---------C-AGCUGCUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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