miRNA display CGI


Results 61 - 80 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28008 3' -55.1 NC_005887.1 + 40051 0.67 0.597853
Target:  5'- gCCUaCGCCCGAUACcguuCCGAucguccgGCgggGCGg -3'
miRNA:   3'- -GGA-GCGGGCUGUGu---GGCU-------UGaa-CGCg -5'
28008 3' -55.1 NC_005887.1 + 5738 0.68 0.587941
Target:  5'- --gCGCgCGAUGCACUGAAacaaaaggUGCGCg -3'
miRNA:   3'- ggaGCGgGCUGUGUGGCUUga------ACGCG- -5'
28008 3' -55.1 NC_005887.1 + 37680 0.68 0.587941
Target:  5'- cCCUCGCCgucuGCGCAgCGGuC-UGCGCg -3'
miRNA:   3'- -GGAGCGGgc--UGUGUgGCUuGaACGCG- -5'
28008 3' -55.1 NC_005887.1 + 13148 0.68 0.587941
Target:  5'- gCCUCGUCuCGuCGCuuGCCGcGCgcGCGCa -3'
miRNA:   3'- -GGAGCGG-GCuGUG--UGGCuUGaaCGCG- -5'
28008 3' -55.1 NC_005887.1 + 14556 0.68 0.585743
Target:  5'- cCCUCGCCUGcgucgGCGCCGucgucaugGCGCu -3'
miRNA:   3'- -GGAGCGGGCug---UGUGGCuugaa---CGCG- -5'
28008 3' -55.1 NC_005887.1 + 684 0.68 0.585743
Target:  5'- cCUUCGUCCGGCuCGCC-AACguagacgaagcgUGCGCc -3'
miRNA:   3'- -GGAGCGGGCUGuGUGGcUUGa-----------ACGCG- -5'
28008 3' -55.1 NC_005887.1 + 14421 0.68 0.584644
Target:  5'- uUCUCGCUCGaAUGCACCGccgcguggcuugaaAACggGUGCg -3'
miRNA:   3'- -GGAGCGGGC-UGUGUGGC--------------UUGaaCGCG- -5'
28008 3' -55.1 NC_005887.1 + 35510 0.68 0.576964
Target:  5'- ---gGUCCGACACGUCGAugUUGCa- -3'
miRNA:   3'- ggagCGGGCUGUGUGGCUugAACGcg -5'
28008 3' -55.1 NC_005887.1 + 39335 0.68 0.576964
Target:  5'- gCUUUGCCCGcgGCGCUGGccGCagGCGCg -3'
miRNA:   3'- -GGAGCGGGCugUGUGGCU--UGaaCGCG- -5'
28008 3' -55.1 NC_005887.1 + 5147 0.68 0.576964
Target:  5'- --aCGCUCGAgaucUACGCCGAGCUgaagGaCGCc -3'
miRNA:   3'- ggaGCGGGCU----GUGUGGCUUGAa---C-GCG- -5'
28008 3' -55.1 NC_005887.1 + 34615 0.68 0.566032
Target:  5'- uCCUUGCCCGcCAgccauuCGCCGuucgcgucGACgagGCGCg -3'
miRNA:   3'- -GGAGCGGGCuGU------GUGGC--------UUGaa-CGCG- -5'
28008 3' -55.1 NC_005887.1 + 23677 0.68 0.566032
Target:  5'- uCCggcgCGCgCGaACGCAUCGAAaUUGUGCu -3'
miRNA:   3'- -GGa---GCGgGC-UGUGUGGCUUgAACGCG- -5'
28008 3' -55.1 NC_005887.1 + 18213 0.68 0.555155
Target:  5'- aUCUCgaaGCCCGGCgcuucACACCGcacGACacGCGCa -3'
miRNA:   3'- -GGAG---CGGGCUG-----UGUGGC---UUGaaCGCG- -5'
28008 3' -55.1 NC_005887.1 + 25013 0.68 0.555155
Target:  5'- gCUCGCgCCGGCGgcCGCCGGccaGCcgguaGCGCa -3'
miRNA:   3'- gGAGCG-GGCUGU--GUGGCU---UGaa---CGCG- -5'
28008 3' -55.1 NC_005887.1 + 8583 0.68 0.54434
Target:  5'- ---aGCCCGGCACGCCGcgccagauGCUcgugaaggccgGCGCg -3'
miRNA:   3'- ggagCGGGCUGUGUGGCu-------UGAa----------CGCG- -5'
28008 3' -55.1 NC_005887.1 + 4466 0.68 0.54434
Target:  5'- gUUCGaCCCGGCuGCcgcgaagguGCCGAACggcGCGCg -3'
miRNA:   3'- gGAGC-GGGCUG-UG---------UGGCUUGaa-CGCG- -5'
28008 3' -55.1 NC_005887.1 + 33771 0.68 0.543262
Target:  5'- aUCUgGCgCGGCGUGCCGGGCUUccaccaaGCGCg -3'
miRNA:   3'- -GGAgCGgGCUGUGUGGCUUGAA-------CGCG- -5'
28008 3' -55.1 NC_005887.1 + 4306 0.68 0.533594
Target:  5'- uCCUCGCcgaggCCGGCcaGCuGCCGGACaUGcCGCa -3'
miRNA:   3'- -GGAGCG-----GGCUG--UG-UGGCUUGaAC-GCG- -5'
28008 3' -55.1 NC_005887.1 + 36450 0.68 0.533594
Target:  5'- -aUCGCCUGGCG-ACCGAGCUcGaCGUu -3'
miRNA:   3'- ggAGCGGGCUGUgUGGCUUGAaC-GCG- -5'
28008 3' -55.1 NC_005887.1 + 4012 0.68 0.533594
Target:  5'- aCCUgCGuUCCGGCGCGCUGAAUUgggGUGg -3'
miRNA:   3'- -GGA-GC-GGGCUGUGUGGCUUGAa--CGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.