miRNA display CGI


Results 41 - 60 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28008 3' -55.1 NC_005887.1 + 30143 0.67 0.632136
Target:  5'- uCCggcgCGCCCGGCgcgGCGCUGucCUU-CGCg -3'
miRNA:   3'- -GGa---GCGGGCUG---UGUGGCuuGAAcGCG- -5'
28008 3' -55.1 NC_005887.1 + 40625 0.67 0.632136
Target:  5'- aCCUCguugaGCCaCGcgaacgugagcuGCAUGCCGcgcAGCUUGCGCu -3'
miRNA:   3'- -GGAG-----CGG-GC------------UGUGUGGC---UUGAACGCG- -5'
28008 3' -55.1 NC_005887.1 + 8051 0.67 0.632136
Target:  5'- cCCguugcCGCCCGcagucagccGCACGgCGAcgGCaUGCGCa -3'
miRNA:   3'- -GGa----GCGGGC---------UGUGUgGCU--UGaACGCG- -5'
28008 3' -55.1 NC_005887.1 + 16343 0.67 0.632136
Target:  5'- gCCUCGCCCccGACGCcgcCCGugaAGCUguaccGCGUc -3'
miRNA:   3'- -GGAGCGGG--CUGUGu--GGC---UUGAa----CGCG- -5'
28008 3' -55.1 NC_005887.1 + 39897 0.67 0.632136
Target:  5'- gCCUCG-UCGACgGCGCCGuAGC--GCGCg -3'
miRNA:   3'- -GGAGCgGGCUG-UGUGGC-UUGaaCGCG- -5'
28008 3' -55.1 NC_005887.1 + 1757 0.67 0.632136
Target:  5'- aCUCGCgaagccgauccUCGACAUGCUcGACcUGCGCg -3'
miRNA:   3'- gGAGCG-----------GGCUGUGUGGcUUGaACGCG- -5'
28008 3' -55.1 NC_005887.1 + 24008 0.67 0.629921
Target:  5'- -gUCGCCCGAacgucgcauguCGCCGA---UGCGCc -3'
miRNA:   3'- ggAGCGGGCUgu---------GUGGCUugaACGCG- -5'
28008 3' -55.1 NC_005887.1 + 15863 0.67 0.621063
Target:  5'- --aCGCCCGcgcgcagcagGCGCACCaGcAGCUcggUGCGCu -3'
miRNA:   3'- ggaGCGGGC----------UGUGUGG-C-UUGA---ACGCG- -5'
28008 3' -55.1 NC_005887.1 + 12083 0.67 0.621063
Target:  5'- aCgUCGCUCGGuCAgguCACCGAcguGCUggccGCGCa -3'
miRNA:   3'- -GgAGCGGGCU-GU---GUGGCU---UGAa---CGCG- -5'
28008 3' -55.1 NC_005887.1 + 13934 0.67 0.621063
Target:  5'- aCgagCGCCUGcGCGCGCuCGGcuGCgacgUGCGCg -3'
miRNA:   3'- gGa--GCGGGC-UGUGUG-GCU--UGa---ACGCG- -5'
28008 3' -55.1 NC_005887.1 + 7723 0.67 0.61
Target:  5'- --gUGUUCGACAUGCCGGguACgaGCGCg -3'
miRNA:   3'- ggaGCGGGCUGUGUGGCU--UGaaCGCG- -5'
28008 3' -55.1 NC_005887.1 + 13423 0.67 0.61
Target:  5'- gCUCGCUgugcguCGACGCAauGGGCgcGCGCa -3'
miRNA:   3'- gGAGCGG------GCUGUGUggCUUGaaCGCG- -5'
28008 3' -55.1 NC_005887.1 + 7968 0.67 0.61
Target:  5'- gCCUcgCGCCCGGC-CGCCucuGAuacGCgggGCGCu -3'
miRNA:   3'- -GGA--GCGGGCUGuGUGG---CU---UGaa-CGCG- -5'
28008 3' -55.1 NC_005887.1 + 2423 0.67 0.61
Target:  5'- gCgUCG-UCGACGCGCCcGGCUcgaucUGCGCg -3'
miRNA:   3'- -GgAGCgGGCUGUGUGGcUUGA-----ACGCG- -5'
28008 3' -55.1 NC_005887.1 + 541 0.67 0.61
Target:  5'- gCCgcCGCgCGcCGCGCCGGAUacaGCGCg -3'
miRNA:   3'- -GGa-GCGgGCuGUGUGGCUUGaa-CGCG- -5'
28008 3' -55.1 NC_005887.1 + 41253 0.67 0.598956
Target:  5'- aCCU-GCUCGGCgucggcaaugGCGCCGucGACcUGCGCa -3'
miRNA:   3'- -GGAgCGGGCUG----------UGUGGC--UUGaACGCG- -5'
28008 3' -55.1 NC_005887.1 + 11095 0.67 0.598956
Target:  5'- --cCGCgUGGCGCAUCGG-CUggUGCGCg -3'
miRNA:   3'- ggaGCGgGCUGUGUGGCUuGA--ACGCG- -5'
28008 3' -55.1 NC_005887.1 + 13383 0.67 0.598956
Target:  5'- gCUCGCgcugaaggCCGGCGCGgCGGACgucgGCGg -3'
miRNA:   3'- gGAGCG--------GGCUGUGUgGCUUGaa--CGCg -5'
28008 3' -55.1 NC_005887.1 + 12406 0.67 0.598956
Target:  5'- --gCGCUCGACACcgucgaucCCGAGaucgUGCGCg -3'
miRNA:   3'- ggaGCGGGCUGUGu-------GGCUUga--ACGCG- -5'
28008 3' -55.1 NC_005887.1 + 27352 0.67 0.598956
Target:  5'- gCUCGggCGGCACGCCugcGGCcUGCGCg -3'
miRNA:   3'- gGAGCggGCUGUGUGGc--UUGaACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.