miRNA display CGI


Results 41 - 60 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28008 3' -55.1 NC_005887.1 + 37951 0.69 0.481139
Target:  5'- -aUCaGCCCGcauccguuACGCGCCaGAAUUUGUGCu -3'
miRNA:   3'- ggAG-CGGGC--------UGUGUGG-CUUGAACGCG- -5'
28008 3' -55.1 NC_005887.1 + 808 0.69 0.481139
Target:  5'- aCUUCGCgUG-CGCGCCGAGCgccuCGCg -3'
miRNA:   3'- -GGAGCGgGCuGUGUGGCUUGaac-GCG- -5'
28008 3' -55.1 NC_005887.1 + 21545 0.69 0.488339
Target:  5'- uCCgcCGCaCCGAUcacggcgauuccaaACugCGAAUUUGCGCc -3'
miRNA:   3'- -GGa-GCG-GGCUG--------------UGugGCUUGAACGCG- -5'
28008 3' -55.1 NC_005887.1 + 8681 0.69 0.490405
Target:  5'- gCCUgauaUGCCCGAgAucaaugaaacccuCGCCGAGCgcaGCGCg -3'
miRNA:   3'- -GGA----GCGGGCUgU-------------GUGGCUUGaa-CGCG- -5'
28008 3' -55.1 NC_005887.1 + 258 0.69 0.49144
Target:  5'- gCCUCGaCCUGAU--GCCGAaagACgugGCGCg -3'
miRNA:   3'- -GGAGC-GGGCUGugUGGCU---UGaa-CGCG- -5'
28008 3' -55.1 NC_005887.1 + 14016 0.69 0.501841
Target:  5'- gCCUcCGCaaccgCCGGCGCGCCGccg--GCGCa -3'
miRNA:   3'- -GGA-GCG-----GGCUGUGUGGCuugaaCGCG- -5'
28008 3' -55.1 NC_005887.1 + 2508 0.69 0.501841
Target:  5'- gCCU-GCUCGuGCAC-CCGGACUgccgcacgcUGCGCa -3'
miRNA:   3'- -GGAgCGGGC-UGUGuGGCUUGA---------ACGCG- -5'
28008 3' -55.1 NC_005887.1 + 9605 0.69 0.512338
Target:  5'- --gCGCgCCGGCGCGCacgCGAGCgccGCGCu -3'
miRNA:   3'- ggaGCG-GGCUGUGUG---GCUUGaa-CGCG- -5'
28008 3' -55.1 NC_005887.1 + 4619 0.69 0.512338
Target:  5'- gCUCGCCgCGGCGCcggugGCCGccg--GCGCg -3'
miRNA:   3'- gGAGCGG-GCUGUG-----UGGCuugaaCGCG- -5'
28008 3' -55.1 NC_005887.1 + 6295 0.69 0.512338
Target:  5'- gUUCGCaCCGGucugccCACACCG-ACgugGCGCa -3'
miRNA:   3'- gGAGCG-GGCU------GUGUGGCuUGaa-CGCG- -5'
28008 3' -55.1 NC_005887.1 + 17741 0.69 0.512338
Target:  5'- --aCGCUCGGCACgGCCGcgcGGCUgaugGCGCc -3'
miRNA:   3'- ggaGCGGGCUGUG-UGGC---UUGAa---CGCG- -5'
28008 3' -55.1 NC_005887.1 + 29755 0.69 0.51974
Target:  5'- gUCUUGCCCGGCGaGCUGAucgcgaggaucgccGCgucGCGCa -3'
miRNA:   3'- -GGAGCGGGCUGUgUGGCU--------------UGaa-CGCG- -5'
28008 3' -55.1 NC_005887.1 + 34892 0.69 0.522924
Target:  5'- gUUCGCgaaCGGCAUGCCGAucACgacGCGCa -3'
miRNA:   3'- gGAGCGg--GCUGUGUGGCU--UGaa-CGCG- -5'
28008 3' -55.1 NC_005887.1 + 34247 0.69 0.522924
Target:  5'- gCCUCGgCgaGCGCGgCGAGC-UGCGCg -3'
miRNA:   3'- -GGAGCgGgcUGUGUgGCUUGaACGCG- -5'
28008 3' -55.1 NC_005887.1 + 27324 0.69 0.522924
Target:  5'- aCUCGUCCGGcCACGUCG-ACU-GCGCc -3'
miRNA:   3'- gGAGCGGGCU-GUGUGGCuUGAaCGCG- -5'
28008 3' -55.1 NC_005887.1 + 10209 0.69 0.522924
Target:  5'- gCgUCGCgUCGAugccCGCGCCGGACg-GCGCg -3'
miRNA:   3'- -GgAGCG-GGCU----GUGUGGCUUGaaCGCG- -5'
28008 3' -55.1 NC_005887.1 + 4306 0.68 0.533594
Target:  5'- uCCUCGCcgaggCCGGCcaGCuGCCGGACaUGcCGCa -3'
miRNA:   3'- -GGAGCG-----GGCUG--UG-UGGCUUGaAC-GCG- -5'
28008 3' -55.1 NC_005887.1 + 36450 0.68 0.533594
Target:  5'- -aUCGCCUGGCG-ACCGAGCUcGaCGUu -3'
miRNA:   3'- ggAGCGGGCUGUgUGGCUUGAaC-GCG- -5'
28008 3' -55.1 NC_005887.1 + 4012 0.68 0.533594
Target:  5'- aCCUgCGuUCCGGCGCGCUGAAUUgggGUGg -3'
miRNA:   3'- -GGA-GC-GGGCUGUGUGGCUUGAa--CGCg -5'
28008 3' -55.1 NC_005887.1 + 33771 0.68 0.543262
Target:  5'- aUCUgGCgCGGCGUGCCGGGCUUccaccaaGCGCg -3'
miRNA:   3'- -GGAgCGgGCUGUGUGGCUUGAA-------CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.