miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28008 3' -55.1 NC_005887.1 + 12605 0.72 0.366939
Target:  5'- gCUCGCCgGGCAagACCGuGCacGCGCg -3'
miRNA:   3'- gGAGCGGgCUGUg-UGGCuUGaaCGCG- -5'
28008 3' -55.1 NC_005887.1 + 36015 0.72 0.366939
Target:  5'- cUCUUGUUCGGCagaACGCCGccguacAGCUUGCGCc -3'
miRNA:   3'- -GGAGCGGGCUG---UGUGGC------UUGAACGCG- -5'
28008 3' -55.1 NC_005887.1 + 14409 0.71 0.393712
Target:  5'- aCCU-GUCCGACACguucaaGCCGGACccgacGCGCg -3'
miRNA:   3'- -GGAgCGGGCUGUG------UGGCUUGaa---CGCG- -5'
28008 3' -55.1 NC_005887.1 + 38584 0.71 0.397376
Target:  5'- cCCUCGUCgagccaguaCGACGCgaacugcauguugcgGCCGuccAGCUUGCGCg -3'
miRNA:   3'- -GGAGCGG---------GCUGUG---------------UGGC---UUGAACGCG- -5'
28008 3' -55.1 NC_005887.1 + 35132 0.71 0.402914
Target:  5'- --gCGCCCGAC--GCCGAcaGCgccUGCGCa -3'
miRNA:   3'- ggaGCGGGCUGugUGGCU--UGa--ACGCG- -5'
28008 3' -55.1 NC_005887.1 + 28276 0.71 0.41225
Target:  5'- ---aGCaucauCGGCACGCCGAGCgcGCGCa -3'
miRNA:   3'- ggagCGg----GCUGUGUGGCUUGaaCGCG- -5'
28008 3' -55.1 NC_005887.1 + 8208 0.71 0.41225
Target:  5'- aCCcgCGCaCCGACACGCgCGGGCUguucaGCa -3'
miRNA:   3'- -GGa-GCG-GGCUGUGUG-GCUUGAacg--CG- -5'
28008 3' -55.1 NC_005887.1 + 9554 0.71 0.41225
Target:  5'- --gUGCCCGugaagcggcGCGCGCCGAuCcUGCGCa -3'
miRNA:   3'- ggaGCGGGC---------UGUGUGGCUuGaACGCG- -5'
28008 3' -55.1 NC_005887.1 + 15327 0.7 0.421719
Target:  5'- -gUCGCgCG-CuCGCCGAGgUUGCGCa -3'
miRNA:   3'- ggAGCGgGCuGuGUGGCUUgAACGCG- -5'
28008 3' -55.1 NC_005887.1 + 15001 0.7 0.421719
Target:  5'- gCUCGUCUG-CGCGCCGcugcGCgugGCGCa -3'
miRNA:   3'- gGAGCGGGCuGUGUGGCu---UGaa-CGCG- -5'
28008 3' -55.1 NC_005887.1 + 14058 0.7 0.431318
Target:  5'- -gUCGCCaCGACGCugCGcGCgcucgGCGUg -3'
miRNA:   3'- ggAGCGG-GCUGUGugGCuUGaa---CGCG- -5'
28008 3' -55.1 NC_005887.1 + 28958 0.7 0.431318
Target:  5'- gCCgaCGUCCGcCGCGCCGGcCUUcaGCGCg -3'
miRNA:   3'- -GGa-GCGGGCuGUGUGGCUuGAA--CGCG- -5'
28008 3' -55.1 NC_005887.1 + 28325 0.7 0.441044
Target:  5'- gCUgCGCCggCGGCGCGCCGGcgguuGCggagGCGCg -3'
miRNA:   3'- gGA-GCGG--GCUGUGUGGCU-----UGaa--CGCG- -5'
28008 3' -55.1 NC_005887.1 + 27801 0.7 0.441044
Target:  5'- uCCgCGCgCGACAUGCCGAuCgacGCGCc -3'
miRNA:   3'- -GGaGCGgGCUGUGUGGCUuGaa-CGCG- -5'
28008 3' -55.1 NC_005887.1 + 39666 0.7 0.450893
Target:  5'- --cCGCCCGuacgcuucacGCGCACCagguGCUUGUGCu -3'
miRNA:   3'- ggaGCGGGC----------UGUGUGGcu--UGAACGCG- -5'
28008 3' -55.1 NC_005887.1 + 39816 0.7 0.450893
Target:  5'- --cCGCCCGACAgCGCC----UUGCGCa -3'
miRNA:   3'- ggaGCGGGCUGU-GUGGcuugAACGCG- -5'
28008 3' -55.1 NC_005887.1 + 31134 0.7 0.450893
Target:  5'- gCUUGCCgGGCAgGCCG----UGCGCa -3'
miRNA:   3'- gGAGCGGgCUGUgUGGCuugaACGCG- -5'
28008 3' -55.1 NC_005887.1 + 12349 0.7 0.454866
Target:  5'- gCUCGCCggccaggcggugacgUGGCAgGCCGAGCagcaccGCGCa -3'
miRNA:   3'- gGAGCGG---------------GCUGUgUGGCUUGaa----CGCG- -5'
28008 3' -55.1 NC_005887.1 + 35618 0.7 0.460861
Target:  5'- uUCUCGCCCGGguugaagucgcuCGgGCUGAGCggUGCGa -3'
miRNA:   3'- -GGAGCGGGCU------------GUgUGGCUUGa-ACGCg -5'
28008 3' -55.1 NC_005887.1 + 11394 0.7 0.470945
Target:  5'- uCCUCacguacgcggGCgCCGACAucacCGCCGAGCgcgcUGUGCa -3'
miRNA:   3'- -GGAG----------CG-GGCUGU----GUGGCUUGa---ACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.