miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28008 3' -55.1 NC_005887.1 + 36423 1.15 0.000354
Target:  5'- aCCUCGCCCGACACACCGAACUUGCGCa -3'
miRNA:   3'- -GGAGCGGGCUGUGUGGCUUGAACGCG- -5'
28008 3' -55.1 NC_005887.1 + 1782 0.8 0.105129
Target:  5'- aCUUGCUCGAgCGCGCCGAgaACUcgUGCGCg -3'
miRNA:   3'- gGAGCGGGCU-GUGUGGCU--UGA--ACGCG- -5'
28008 3' -55.1 NC_005887.1 + 27228 0.8 0.114475
Target:  5'- gUCggGUCCGugACGCCGuACUUGCGCa -3'
miRNA:   3'- -GGagCGGGCugUGUGGCuUGAACGCG- -5'
28008 3' -55.1 NC_005887.1 + 897 0.79 0.131791
Target:  5'- uCCUCGCgCGGCGUGCCGAGCa-GCGCa -3'
miRNA:   3'- -GGAGCGgGCUGUGUGGCUUGaaCGCG- -5'
28008 3' -55.1 NC_005887.1 + 11599 0.76 0.204487
Target:  5'- aCCggaucggCGCUCGACACGCaggugcaGAGCgUGCGCa -3'
miRNA:   3'- -GGa------GCGGGCUGUGUGg------CUUGaACGCG- -5'
28008 3' -55.1 NC_005887.1 + 36293 0.76 0.210029
Target:  5'- aCUCGUCCGGUugGCCGAuC-UGCGCg -3'
miRNA:   3'- gGAGCGGGCUGugUGGCUuGaACGCG- -5'
28008 3' -55.1 NC_005887.1 + 1055 0.75 0.233506
Target:  5'- uCCUUGCCCGGCggcaGCAgCGcGCccgUGCGCa -3'
miRNA:   3'- -GGAGCGGGCUG----UGUgGCuUGa--ACGCG- -5'
28008 3' -55.1 NC_005887.1 + 28159 0.75 0.239083
Target:  5'- aCCUCGCacgCCGACuggucgucgagcaACAUCGGGCUgUGCGCc -3'
miRNA:   3'- -GGAGCG---GGCUG-------------UGUGGCUUGA-ACGCG- -5'
28008 3' -55.1 NC_005887.1 + 16143 0.74 0.252531
Target:  5'- aCCcCGCCaaccacCGGCGCGCCGAG--UGCGCg -3'
miRNA:   3'- -GGaGCGG------GCUGUGUGGCUUgaACGCG- -5'
28008 3' -55.1 NC_005887.1 + 26917 0.74 0.252531
Target:  5'- aCgUCGUCCGGUugACCGAACacguaUGCGCg -3'
miRNA:   3'- -GgAGCGGGCUGugUGGCUUGa----ACGCG- -5'
28008 3' -55.1 NC_005887.1 + 7215 0.73 0.287049
Target:  5'- gCC-CGUCCGugGCGCCGGAUUccgauccGCGCc -3'
miRNA:   3'- -GGaGCGGGCugUGUGGCUUGAa------CGCG- -5'
28008 3' -55.1 NC_005887.1 + 12212 0.73 0.287049
Target:  5'- gCCgCGCCgGGCGCGCCGGAUUUcaCGCc -3'
miRNA:   3'- -GGaGCGGgCUGUGUGGCUUGAAc-GCG- -5'
28008 3' -55.1 NC_005887.1 + 9733 0.73 0.287049
Target:  5'- --aCGCCCGGCA-GCUGAacaaGCUUGCGUg -3'
miRNA:   3'- ggaGCGGGCUGUgUGGCU----UGAACGCG- -5'
28008 3' -55.1 NC_005887.1 + 26462 0.73 0.294383
Target:  5'- gCUgCGCgUCGAgCGCACCGAGCUgcuggUGCGCc -3'
miRNA:   3'- gGA-GCG-GGCU-GUGUGGCUUGA-----ACGCG- -5'
28008 3' -55.1 NC_005887.1 + 25091 0.73 0.300355
Target:  5'- gUCUCGCCCGGCACgaucuuauugacgccGCCGuacgcgaucGugucccacacgcccuGCUUGCGCg -3'
miRNA:   3'- -GGAGCGGGCUGUG---------------UGGC---------U---------------UGAACGCG- -5'
28008 3' -55.1 NC_005887.1 + 39992 0.73 0.301862
Target:  5'- gCCgUgGCCCGACAUGCaGGACgucgcggUGCGCa -3'
miRNA:   3'- -GG-AgCGGGCUGUGUGgCUUGa------ACGCG- -5'
28008 3' -55.1 NC_005887.1 + 26197 0.72 0.324376
Target:  5'- gCUCGCgcacUCGGCGCGCCGGugguuggcgggguGgUUGCGCg -3'
miRNA:   3'- gGAGCG----GGCUGUGUGGCU-------------UgAACGCG- -5'
28008 3' -55.1 NC_005887.1 + 24100 0.72 0.340619
Target:  5'- gCUCGCCCGugACggugcccggcgugGCCGAgGCgaucaccuucgUGCGCa -3'
miRNA:   3'- gGAGCGGGCugUG-------------UGGCU-UGa----------ACGCG- -5'
28008 3' -55.1 NC_005887.1 + 1417 0.72 0.3498
Target:  5'- --gCGCUCGGCguuGCCGAACUcggUGCGCg -3'
miRNA:   3'- ggaGCGGGCUGug-UGGCUUGA---ACGCG- -5'
28008 3' -55.1 NC_005887.1 + 35363 0.72 0.366939
Target:  5'- --aCGCCCGGCAcCACgCGGGCcUGCaGCa -3'
miRNA:   3'- ggaGCGGGCUGU-GUG-GCUUGaACG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.