Results 1 - 20 of 136 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28008 | 3' | -55.1 | NC_005887.1 | + | 7433 | 0.66 | 0.698207 |
Target: 5'- gCCUCGUuuGGCGCu---GGCgUGCGCg -3' miRNA: 3'- -GGAGCGggCUGUGuggcUUGaACGCG- -5' |
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28008 | 3' | -55.1 | NC_005887.1 | + | 20542 | 0.66 | 0.709057 |
Target: 5'- --gCGCCCGGCAgCGCCGcgGACgucGUGUu -3' miRNA: 3'- ggaGCGGGCUGU-GUGGC--UUGaa-CGCG- -5' |
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28008 | 3' | -55.1 | NC_005887.1 | + | 314 | 0.66 | 0.687293 |
Target: 5'- gCCgcggugCGCgCG-UACACCGAGgaagUGCGCg -3' miRNA: 3'- -GGa-----GCGgGCuGUGUGGCUUga--ACGCG- -5' |
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28008 | 3' | -55.1 | NC_005887.1 | + | 2428 | 0.66 | 0.665314 |
Target: 5'- gCC-CGCgCCGACgaaugACACCucGC-UGCGCu -3' miRNA: 3'- -GGaGCG-GGCUG-----UGUGGcuUGaACGCG- -5' |
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28008 | 3' | -55.1 | NC_005887.1 | + | 982 | 0.66 | 0.709057 |
Target: 5'- -aUCG-CCGACACgcgcaauuGCCGGccGCcgUGCGCg -3' miRNA: 3'- ggAGCgGGCUGUG--------UGGCU--UGa-ACGCG- -5' |
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28008 | 3' | -55.1 | NC_005887.1 | + | 11720 | 0.66 | 0.697119 |
Target: 5'- gCUUCGCCgcgcgcaCGGCGCGCaCGAAUgcaCGCa -3' miRNA: 3'- -GGAGCGG-------GCUGUGUG-GCUUGaacGCG- -5' |
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28008 | 3' | -55.1 | NC_005887.1 | + | 11352 | 0.66 | 0.709057 |
Target: 5'- gCCgCGCCacgcgagaGACGCAccCCGAACagUGgGCg -3' miRNA: 3'- -GGaGCGGg-------CUGUGU--GGCUUGa-ACgCG- -5' |
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28008 | 3' | -55.1 | NC_005887.1 | + | 30802 | 0.66 | 0.709057 |
Target: 5'- aCCgccgCGCgCuGCGCGCCGAGCUgcUGaucaGCu -3' miRNA: 3'- -GGa---GCGgGcUGUGUGGCUUGA--ACg---CG- -5' |
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28008 | 3' | -55.1 | NC_005887.1 | + | 41327 | 0.66 | 0.709057 |
Target: 5'- cCUUCGUCCGcuuCAaGCCGGugUacaGCGCg -3' miRNA: 3'- -GGAGCGGGCu--GUgUGGCUugAa--CGCG- -5' |
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28008 | 3' | -55.1 | NC_005887.1 | + | 26333 | 0.66 | 0.676324 |
Target: 5'- gCCgUGgCCGGCGCugGCCGGG--UGCGCg -3' miRNA: 3'- -GGaGCgGGCUGUG--UGGCUUgaACGCG- -5' |
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28008 | 3' | -55.1 | NC_005887.1 | + | 15373 | 0.66 | 0.665314 |
Target: 5'- --aCGCCCGAgcaggucgACGCCGcGCUgaucGCGCg -3' miRNA: 3'- ggaGCGGGCUg-------UGUGGCuUGAa---CGCG- -5' |
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28008 | 3' | -55.1 | NC_005887.1 | + | 30105 | 0.66 | 0.665314 |
Target: 5'- gCUUCGa-CGGCuACGCCGAACgcccGUGCa -3' miRNA: 3'- -GGAGCggGCUG-UGUGGCUUGaa--CGCG- -5' |
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28008 | 3' | -55.1 | NC_005887.1 | + | 39773 | 0.66 | 0.687293 |
Target: 5'- cUCUgGUCgCGGCgcucGCGCCGAucgUUGCGCg -3' miRNA: 3'- -GGAgCGG-GCUG----UGUGGCUug-AACGCG- -5' |
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28008 | 3' | -55.1 | NC_005887.1 | + | 32749 | 0.66 | 0.665314 |
Target: 5'- gCUCGCgUG-CGCGCCG-GCgcGCGCc -3' miRNA: 3'- gGAGCGgGCuGUGUGGCuUGaaCGCG- -5' |
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28008 | 3' | -55.1 | NC_005887.1 | + | 27059 | 0.66 | 0.680717 |
Target: 5'- --cCGCCCGACuucuuCA-CGAACUcggugccgcgcuugcUGCGCu -3' miRNA: 3'- ggaGCGGGCUGu----GUgGCUUGA---------------ACGCG- -5' |
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28008 | 3' | -55.1 | NC_005887.1 | + | 27135 | 0.66 | 0.676324 |
Target: 5'- aCUCGUCggCGAuCACgcgGCCGAACggccacggGCGCg -3' miRNA: 3'- gGAGCGG--GCU-GUG---UGGCUUGaa------CGCG- -5' |
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28008 | 3' | -55.1 | NC_005887.1 | + | 4885 | 0.66 | 0.665314 |
Target: 5'- gCUCGCgaCGAUgguCGCCGAggGCcgGCGCg -3' miRNA: 3'- gGAGCGg-GCUGu--GUGGCU--UGaaCGCG- -5' |
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28008 | 3' | -55.1 | NC_005887.1 | + | 18900 | 0.66 | 0.676324 |
Target: 5'- -gUCGCCCGGCAC-CgGcAGCccgcaGCGCu -3' miRNA: 3'- ggAGCGGGCUGUGuGgC-UUGaa---CGCG- -5' |
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28008 | 3' | -55.1 | NC_005887.1 | + | 35869 | 0.66 | 0.676324 |
Target: 5'- --gCGCUCGGCagACACCGcGACgccGCGCc -3' miRNA: 3'- ggaGCGGGCUG--UGUGGC-UUGaa-CGCG- -5' |
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28008 | 3' | -55.1 | NC_005887.1 | + | 36392 | 0.66 | 0.698207 |
Target: 5'- -aUCGCCgGACGCGCC-AGCgaGCu- -3' miRNA: 3'- ggAGCGGgCUGUGUGGcUUGaaCGcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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