miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28008 3' -55.1 NC_005887.1 + 4466 0.68 0.54434
Target:  5'- gUUCGaCCCGGCuGCcgcgaagguGCCGAACggcGCGCg -3'
miRNA:   3'- gGAGC-GGGCUG-UG---------UGGCUUGaa-CGCG- -5'
28008 3' -55.1 NC_005887.1 + 4619 0.69 0.512338
Target:  5'- gCUCGCCgCGGCGCcggugGCCGccg--GCGCg -3'
miRNA:   3'- gGAGCGG-GCUGUG-----UGGCuugaaCGCG- -5'
28008 3' -55.1 NC_005887.1 + 4885 0.66 0.665314
Target:  5'- gCUCGCgaCGAUgguCGCCGAggGCcgGCGCg -3'
miRNA:   3'- gGAGCGg-GCUGu--GUGGCU--UGaaCGCG- -5'
28008 3' -55.1 NC_005887.1 + 4887 0.66 0.665314
Target:  5'- -aUCGCauCCGGCGCACUGcaAACc-GCGCa -3'
miRNA:   3'- ggAGCG--GGCUGUGUGGC--UUGaaCGCG- -5'
28008 3' -55.1 NC_005887.1 + 5147 0.68 0.576964
Target:  5'- --aCGCUCGAgaucUACGCCGAGCUgaagGaCGCc -3'
miRNA:   3'- ggaGCGGGCU----GUGUGGCUUGAa---C-GCG- -5'
28008 3' -55.1 NC_005887.1 + 5738 0.68 0.587941
Target:  5'- --gCGCgCGAUGCACUGAAacaaaaggUGCGCg -3'
miRNA:   3'- ggaGCGgGCUGUGUGGCUUga------ACGCG- -5'
28008 3' -55.1 NC_005887.1 + 6295 0.69 0.512338
Target:  5'- gUUCGCaCCGGucugccCACACCG-ACgugGCGCa -3'
miRNA:   3'- gGAGCG-GGCU------GUGUGGCuUGaa-CGCG- -5'
28008 3' -55.1 NC_005887.1 + 6423 0.66 0.687293
Target:  5'- -aUCGCCguguggccggaCGGcCGCGCCGAGaucgaagUGCGCg -3'
miRNA:   3'- ggAGCGG-----------GCU-GUGUGGCUUga-----ACGCG- -5'
28008 3' -55.1 NC_005887.1 + 6783 0.66 0.697119
Target:  5'- gCCgugUGCCCGGCGCucGCCGcacaugucgagcaGACcaucgGCGCu -3'
miRNA:   3'- -GGa--GCGGGCUGUG--UGGC-------------UUGaa---CGCG- -5'
28008 3' -55.1 NC_005887.1 + 7120 0.66 0.665314
Target:  5'- gCUCaucaGCCCcACGCagGCCGAcaaGCUgcUGCGCa -3'
miRNA:   3'- gGAG----CGGGcUGUG--UGGCU---UGA--ACGCG- -5'
28008 3' -55.1 NC_005887.1 + 7215 0.73 0.287049
Target:  5'- gCC-CGUCCGugGCGCCGGAUUccgauccGCGCc -3'
miRNA:   3'- -GGaGCGGGCugUGUGGCUUGAa------CGCG- -5'
28008 3' -55.1 NC_005887.1 + 7433 0.66 0.698207
Target:  5'- gCCUCGUuuGGCGCu---GGCgUGCGCg -3'
miRNA:   3'- -GGAGCGggCUGUGuggcUUGaACGCG- -5'
28008 3' -55.1 NC_005887.1 + 7723 0.67 0.61
Target:  5'- --gUGUUCGACAUGCCGGguACgaGCGCg -3'
miRNA:   3'- ggaGCGGGCUGUGUGGCU--UGaaCGCG- -5'
28008 3' -55.1 NC_005887.1 + 7968 0.67 0.61
Target:  5'- gCCUcgCGCCCGGC-CGCCucuGAuacGCgggGCGCu -3'
miRNA:   3'- -GGA--GCGGGCUGuGUGG---CU---UGaa-CGCG- -5'
28008 3' -55.1 NC_005887.1 + 8051 0.67 0.632136
Target:  5'- cCCguugcCGCCCGcagucagccGCACGgCGAcgGCaUGCGCa -3'
miRNA:   3'- -GGa----GCGGGC---------UGUGUgGCU--UGaACGCG- -5'
28008 3' -55.1 NC_005887.1 + 8208 0.71 0.41225
Target:  5'- aCCcgCGCaCCGACACGCgCGGGCUguucaGCa -3'
miRNA:   3'- -GGa-GCG-GGCUGUGUG-GCUUGAacg--CG- -5'
28008 3' -55.1 NC_005887.1 + 8583 0.68 0.54434
Target:  5'- ---aGCCCGGCACGCCGcgccagauGCUcgugaaggccgGCGCg -3'
miRNA:   3'- ggagCGGGCUGUGUGGCu-------UGAa----------CGCG- -5'
28008 3' -55.1 NC_005887.1 + 8681 0.69 0.490405
Target:  5'- gCCUgauaUGCCCGAgAucaaugaaacccuCGCCGAGCgcaGCGCg -3'
miRNA:   3'- -GGA----GCGGGCUgU-------------GUGGCUUGaa-CGCG- -5'
28008 3' -55.1 NC_005887.1 + 9554 0.71 0.41225
Target:  5'- --gUGCCCGugaagcggcGCGCGCCGAuCcUGCGCa -3'
miRNA:   3'- ggaGCGGGC---------UGUGUGGCUuGaACGCG- -5'
28008 3' -55.1 NC_005887.1 + 9605 0.69 0.512338
Target:  5'- --gCGCgCCGGCGCGCacgCGAGCgccGCGCu -3'
miRNA:   3'- ggaGCG-GGCUGUGUG---GCUUGaa-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.