miRNA display CGI


Results 41 - 60 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28008 3' -55.1 NC_005887.1 + 9733 0.73 0.287049
Target:  5'- --aCGCCCGGCA-GCUGAacaaGCUUGCGUg -3'
miRNA:   3'- ggaGCGGGCUGUgUGGCU----UGAACGCG- -5'
28008 3' -55.1 NC_005887.1 + 10209 0.69 0.522924
Target:  5'- gCgUCGCgUCGAugccCGCGCCGGACg-GCGCg -3'
miRNA:   3'- -GgAGCG-GGCU----GUGUGGCUUGaaCGCG- -5'
28008 3' -55.1 NC_005887.1 + 11095 0.67 0.598956
Target:  5'- --cCGCgUGGCGCAUCGG-CUggUGCGCg -3'
miRNA:   3'- ggaGCGgGCUGUGUGGCUuGA--ACGCG- -5'
28008 3' -55.1 NC_005887.1 + 11352 0.66 0.709057
Target:  5'- gCCgCGCCacgcgagaGACGCAccCCGAACagUGgGCg -3'
miRNA:   3'- -GGaGCGGg-------CUGUGU--GGCUUGa-ACgCG- -5'
28008 3' -55.1 NC_005887.1 + 11394 0.7 0.470945
Target:  5'- uCCUCacguacgcggGCgCCGACAucacCGCCGAGCgcgcUGUGCa -3'
miRNA:   3'- -GGAG----------CG-GGCUGU----GUGGCUUGa---ACGCG- -5'
28008 3' -55.1 NC_005887.1 + 11599 0.76 0.204487
Target:  5'- aCCggaucggCGCUCGACACGCaggugcaGAGCgUGCGCa -3'
miRNA:   3'- -GGa------GCGGGCUGUGUGg------CUUGaACGCG- -5'
28008 3' -55.1 NC_005887.1 + 11720 0.66 0.697119
Target:  5'- gCUUCGCCgcgcgcaCGGCGCGCaCGAAUgcaCGCa -3'
miRNA:   3'- -GGAGCGG-------GCUGUGUG-GCUUGaacGCG- -5'
28008 3' -55.1 NC_005887.1 + 11825 0.67 0.647636
Target:  5'- gUCUCGgCCGACGgccgccUACgCGGGCUgaugcaguuuugcggUGCGCa -3'
miRNA:   3'- -GGAGCgGGCUGU------GUG-GCUUGA---------------ACGCG- -5'
28008 3' -55.1 NC_005887.1 + 12035 0.66 0.673025
Target:  5'- aUCUCGUguucgagaacgugaUCGGCcugACugCGAACgucgUGCGCg -3'
miRNA:   3'- -GGAGCG--------------GGCUG---UGugGCUUGa---ACGCG- -5'
28008 3' -55.1 NC_005887.1 + 12083 0.67 0.621063
Target:  5'- aCgUCGCUCGGuCAgguCACCGAcguGCUggccGCGCa -3'
miRNA:   3'- -GgAGCGGGCU-GU---GUGGCU---UGAa---CGCG- -5'
28008 3' -55.1 NC_005887.1 + 12212 0.73 0.287049
Target:  5'- gCCgCGCCgGGCGCGCCGGAUUUcaCGCc -3'
miRNA:   3'- -GGaGCGGgCUGUGUGGCUUGAAc-GCG- -5'
28008 3' -55.1 NC_005887.1 + 12349 0.7 0.454866
Target:  5'- gCUCGCCggccaggcggugacgUGGCAgGCCGAGCagcaccGCGCa -3'
miRNA:   3'- gGAGCGG---------------GCUGUgUGGCUUGaa----CGCG- -5'
28008 3' -55.1 NC_005887.1 + 12406 0.67 0.598956
Target:  5'- --gCGCUCGACACcgucgaucCCGAGaucgUGCGCg -3'
miRNA:   3'- ggaGCGGGCUGUGu-------GGCUUga--ACGCG- -5'
28008 3' -55.1 NC_005887.1 + 12605 0.72 0.366939
Target:  5'- gCUCGCCgGGCAagACCGuGCacGCGCg -3'
miRNA:   3'- gGAGCGGgCUGUg-UGGCuUGaaCGCG- -5'
28008 3' -55.1 NC_005887.1 + 13148 0.68 0.587941
Target:  5'- gCCUCGUCuCGuCGCuuGCCGcGCgcGCGCa -3'
miRNA:   3'- -GGAGCGG-GCuGUG--UGGCuUGaaCGCG- -5'
28008 3' -55.1 NC_005887.1 + 13383 0.67 0.598956
Target:  5'- gCUCGCgcugaaggCCGGCGCGgCGGACgucgGCGg -3'
miRNA:   3'- gGAGCG--------GGCUGUGUgGCUUGaa--CGCg -5'
28008 3' -55.1 NC_005887.1 + 13423 0.67 0.61
Target:  5'- gCUCGCUgugcguCGACGCAauGGGCgcGCGCa -3'
miRNA:   3'- gGAGCGG------GCUGUGUggCUUGaaCGCG- -5'
28008 3' -55.1 NC_005887.1 + 13819 0.66 0.665314
Target:  5'- ---aGCCCGGCGCGCgUGAGCgUGCc- -3'
miRNA:   3'- ggagCGGGCUGUGUG-GCUUGaACGcg -5'
28008 3' -55.1 NC_005887.1 + 13934 0.67 0.621063
Target:  5'- aCgagCGCCUGcGCGCGCuCGGcuGCgacgUGCGCg -3'
miRNA:   3'- gGa--GCGGGC-UGUGUG-GCU--UGa---ACGCG- -5'
28008 3' -55.1 NC_005887.1 + 14016 0.69 0.501841
Target:  5'- gCCUcCGCaaccgCCGGCGCGCCGccg--GCGCa -3'
miRNA:   3'- -GGA-GCG-----GGCUGUGUGGCuugaaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.