Results 41 - 60 of 136 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28008 | 3' | -55.1 | NC_005887.1 | + | 28159 | 0.75 | 0.239083 |
Target: 5'- aCCUCGCacgCCGACuggucgucgagcaACAUCGGGCUgUGCGCc -3' miRNA: 3'- -GGAGCG---GGCUG-------------UGUGGCUUGA-ACGCG- -5' |
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28008 | 3' | -55.1 | NC_005887.1 | + | 36293 | 0.76 | 0.210029 |
Target: 5'- aCUCGUCCGGUugGCCGAuC-UGCGCg -3' miRNA: 3'- gGAGCGGGCUGugUGGCUuGaACGCG- -5' |
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28008 | 3' | -55.1 | NC_005887.1 | + | 11599 | 0.76 | 0.204487 |
Target: 5'- aCCggaucggCGCUCGACACGCaggugcaGAGCgUGCGCa -3' miRNA: 3'- -GGa------GCGGGCUGUGUGg------CUUGaACGCG- -5' |
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28008 | 3' | -55.1 | NC_005887.1 | + | 35618 | 0.7 | 0.460861 |
Target: 5'- uUCUCGCCCGGguugaagucgcuCGgGCUGAGCggUGCGa -3' miRNA: 3'- -GGAGCGGGCU------------GUgUGGCUUGa-ACGCg -5' |
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28008 | 3' | -55.1 | NC_005887.1 | + | 37951 | 0.69 | 0.481139 |
Target: 5'- -aUCaGCCCGcauccguuACGCGCCaGAAUUUGUGCu -3' miRNA: 3'- ggAG-CGGGC--------UGUGUGG-CUUGAACGCG- -5' |
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28008 | 3' | -55.1 | NC_005887.1 | + | 4466 | 0.68 | 0.54434 |
Target: 5'- gUUCGaCCCGGCuGCcgcgaagguGCCGAACggcGCGCg -3' miRNA: 3'- gGAGC-GGGCUG-UG---------UGGCUUGaa-CGCG- -5' |
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28008 | 3' | -55.1 | NC_005887.1 | + | 33771 | 0.68 | 0.543262 |
Target: 5'- aUCUgGCgCGGCGUGCCGGGCUUccaccaaGCGCg -3' miRNA: 3'- -GGAgCGgGCUGUGUGGCUUGAA-------CGCG- -5' |
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28008 | 3' | -55.1 | NC_005887.1 | + | 4306 | 0.68 | 0.533594 |
Target: 5'- uCCUCGCcgaggCCGGCcaGCuGCCGGACaUGcCGCa -3' miRNA: 3'- -GGAGCG-----GGCUG--UG-UGGCUUGaAC-GCG- -5' |
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28008 | 3' | -55.1 | NC_005887.1 | + | 4012 | 0.68 | 0.533594 |
Target: 5'- aCCUgCGuUCCGGCGCGCUGAAUUgggGUGg -3' miRNA: 3'- -GGA-GC-GGGCUGUGUGGCUUGAa--CGCg -5' |
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28008 | 3' | -55.1 | NC_005887.1 | + | 10209 | 0.69 | 0.522924 |
Target: 5'- gCgUCGCgUCGAugccCGCGCCGGACg-GCGCg -3' miRNA: 3'- -GgAGCG-GGCU----GUGUGGCUUGaaCGCG- -5' |
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28008 | 3' | -55.1 | NC_005887.1 | + | 27324 | 0.69 | 0.522924 |
Target: 5'- aCUCGUCCGGcCACGUCG-ACU-GCGCc -3' miRNA: 3'- gGAGCGGGCU-GUGUGGCuUGAaCGCG- -5' |
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28008 | 3' | -55.1 | NC_005887.1 | + | 29755 | 0.69 | 0.51974 |
Target: 5'- gUCUUGCCCGGCGaGCUGAucgcgaggaucgccGCgucGCGCa -3' miRNA: 3'- -GGAGCGGGCUGUgUGGCU--------------UGaa-CGCG- -5' |
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28008 | 3' | -55.1 | NC_005887.1 | + | 17741 | 0.69 | 0.512338 |
Target: 5'- --aCGCUCGGCACgGCCGcgcGGCUgaugGCGCc -3' miRNA: 3'- ggaGCGGGCUGUG-UGGC---UUGAa---CGCG- -5' |
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28008 | 3' | -55.1 | NC_005887.1 | + | 4619 | 0.69 | 0.512338 |
Target: 5'- gCUCGCCgCGGCGCcggugGCCGccg--GCGCg -3' miRNA: 3'- gGAGCGG-GCUGUG-----UGGCuugaaCGCG- -5' |
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28008 | 3' | -55.1 | NC_005887.1 | + | 6295 | 0.69 | 0.512338 |
Target: 5'- gUUCGCaCCGGucugccCACACCG-ACgugGCGCa -3' miRNA: 3'- gGAGCG-GGCU------GUGUGGCuUGaa-CGCG- -5' |
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28008 | 3' | -55.1 | NC_005887.1 | + | 14016 | 0.69 | 0.501841 |
Target: 5'- gCCUcCGCaaccgCCGGCGCGCCGccg--GCGCa -3' miRNA: 3'- -GGA-GCG-----GGCUGUGUGGCuugaaCGCG- -5' |
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28008 | 3' | -55.1 | NC_005887.1 | + | 2508 | 0.69 | 0.501841 |
Target: 5'- gCCU-GCUCGuGCAC-CCGGACUgccgcacgcUGCGCa -3' miRNA: 3'- -GGAgCGGGC-UGUGuGGCUUGA---------ACGCG- -5' |
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28008 | 3' | -55.1 | NC_005887.1 | + | 258 | 0.69 | 0.49144 |
Target: 5'- gCCUCGaCCUGAU--GCCGAaagACgugGCGCg -3' miRNA: 3'- -GGAGC-GGGCUGugUGGCU---UGaa-CGCG- -5' |
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28008 | 3' | -55.1 | NC_005887.1 | + | 36423 | 1.15 | 0.000354 |
Target: 5'- aCCUCGCCCGACACACCGAACUUGCGCa -3' miRNA: 3'- -GGAGCGGGCUGUGUGGCUUGAACGCG- -5' |
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28008 | 3' | -55.1 | NC_005887.1 | + | 41327 | 0.66 | 0.709057 |
Target: 5'- cCUUCGUCCGcuuCAaGCCGGugUacaGCGCg -3' miRNA: 3'- -GGAGCGGGCu--GUgUGGCUugAa--CGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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