miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28008 3' -55.1 NC_005887.1 + 35869 0.66 0.676324
Target:  5'- --gCGCUCGGCagACACCGcGACgccGCGCc -3'
miRNA:   3'- ggaGCGGGCUG--UGUGGC-UUGaa-CGCG- -5'
28008 3' -55.1 NC_005887.1 + 35618 0.7 0.460861
Target:  5'- uUCUCGCCCGGguugaagucgcuCGgGCUGAGCggUGCGa -3'
miRNA:   3'- -GGAGCGGGCU------------GUgUGGCUUGa-ACGCg -5'
28008 3' -55.1 NC_005887.1 + 35510 0.68 0.576964
Target:  5'- ---gGUCCGACACGUCGAugUUGCa- -3'
miRNA:   3'- ggagCGGGCUGUGUGGCUugAACGcg -5'
28008 3' -55.1 NC_005887.1 + 35363 0.72 0.366939
Target:  5'- --aCGCCCGGCAcCACgCGGGCcUGCaGCa -3'
miRNA:   3'- ggaGCGGGCUGU-GUG-GCUUGaACG-CG- -5'
28008 3' -55.1 NC_005887.1 + 35132 0.71 0.402914
Target:  5'- --gCGCCCGAC--GCCGAcaGCgccUGCGCa -3'
miRNA:   3'- ggaGCGGGCUGugUGGCU--UGa--ACGCG- -5'
28008 3' -55.1 NC_005887.1 + 34892 0.69 0.522924
Target:  5'- gUUCGCgaaCGGCAUGCCGAucACgacGCGCa -3'
miRNA:   3'- gGAGCGg--GCUGUGUGGCU--UGaa-CGCG- -5'
28008 3' -55.1 NC_005887.1 + 34615 0.68 0.566032
Target:  5'- uCCUUGCCCGcCAgccauuCGCCGuucgcgucGACgagGCGCg -3'
miRNA:   3'- -GGAGCGGGCuGU------GUGGC--------UUGaa-CGCG- -5'
28008 3' -55.1 NC_005887.1 + 34247 0.69 0.522924
Target:  5'- gCCUCGgCgaGCGCGgCGAGC-UGCGCg -3'
miRNA:   3'- -GGAGCgGgcUGUGUgGCUUGaACGCG- -5'
28008 3' -55.1 NC_005887.1 + 33868 0.66 0.687293
Target:  5'- aCUCgaGCCaCGuguCGuCGCCGAGCgguUGCGCc -3'
miRNA:   3'- gGAG--CGG-GCu--GU-GUGGCUUGa--ACGCG- -5'
28008 3' -55.1 NC_005887.1 + 33771 0.68 0.543262
Target:  5'- aUCUgGCgCGGCGUGCCGGGCUUccaccaaGCGCg -3'
miRNA:   3'- -GGAgCGgGCUGUGUGGCUUGAA-------CGCG- -5'
28008 3' -55.1 NC_005887.1 + 33726 0.66 0.698207
Target:  5'- uUUCGCCagauCGACacguGCACCGAGCaacgGCGa -3'
miRNA:   3'- gGAGCGG----GCUG----UGUGGCUUGaa--CGCg -5'
28008 3' -55.1 NC_005887.1 + 32749 0.66 0.665314
Target:  5'- gCUCGCgUG-CGCGCCG-GCgcGCGCc -3'
miRNA:   3'- gGAGCGgGCuGUGUGGCuUGaaCGCG- -5'
28008 3' -55.1 NC_005887.1 + 31134 0.7 0.450893
Target:  5'- gCUUGCCgGGCAgGCCG----UGCGCa -3'
miRNA:   3'- gGAGCGGgCUGUgUGGCuugaACGCG- -5'
28008 3' -55.1 NC_005887.1 + 30802 0.66 0.709057
Target:  5'- aCCgccgCGCgCuGCGCGCCGAGCUgcUGaucaGCu -3'
miRNA:   3'- -GGa---GCGgGcUGUGUGGCUUGA--ACg---CG- -5'
28008 3' -55.1 NC_005887.1 + 30707 0.66 0.665314
Target:  5'- aCCgCGUCUGcaACGCGUCGAGCUcggcauUGCGCa -3'
miRNA:   3'- -GGaGCGGGC--UGUGUGGCUUGA------ACGCG- -5'
28008 3' -55.1 NC_005887.1 + 30143 0.67 0.632136
Target:  5'- uCCggcgCGCCCGGCgcgGCGCUGucCUU-CGCg -3'
miRNA:   3'- -GGa---GCGGGCUG---UGUGGCuuGAAcGCG- -5'
28008 3' -55.1 NC_005887.1 + 30105 0.66 0.665314
Target:  5'- gCUUCGa-CGGCuACGCCGAACgcccGUGCa -3'
miRNA:   3'- -GGAGCggGCUG-UGUGGCUUGaa--CGCG- -5'
28008 3' -55.1 NC_005887.1 + 29755 0.69 0.51974
Target:  5'- gUCUUGCCCGGCGaGCUGAucgcgaggaucgccGCgucGCGCa -3'
miRNA:   3'- -GGAGCGGGCUGUgUGGCU--------------UGaa-CGCG- -5'
28008 3' -55.1 NC_005887.1 + 28958 0.7 0.431318
Target:  5'- gCCgaCGUCCGcCGCGCCGGcCUUcaGCGCg -3'
miRNA:   3'- -GGa-GCGGGCuGUGUGGCUuGAA--CGCG- -5'
28008 3' -55.1 NC_005887.1 + 28894 0.66 0.654272
Target:  5'- gCCUgcgCGCCCGuCAggaugaacgUGCUGAGCggUGCGCc -3'
miRNA:   3'- -GGA---GCGGGCuGU---------GUGGCUUGa-ACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.