miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28008 3' -55.1 NC_005887.1 + 41327 0.66 0.709057
Target:  5'- cCUUCGUCCGcuuCAaGCCGGugUacaGCGCg -3'
miRNA:   3'- -GGAGCGGGCu--GUgUGGCUugAa--CGCG- -5'
28008 3' -55.1 NC_005887.1 + 41253 0.67 0.598956
Target:  5'- aCCU-GCUCGGCgucggcaaugGCGCCGucGACcUGCGCa -3'
miRNA:   3'- -GGAgCGGGCUG----------UGUGGC--UUGaACGCG- -5'
28008 3' -55.1 NC_005887.1 + 40625 0.67 0.632136
Target:  5'- aCCUCguugaGCCaCGcgaacgugagcuGCAUGCCGcgcAGCUUGCGCu -3'
miRNA:   3'- -GGAG-----CGG-GC------------UGUGUGGC---UUGAACGCG- -5'
28008 3' -55.1 NC_005887.1 + 40080 0.66 0.687293
Target:  5'- gCUUCaGCUCGAU-C-CCGAACUUacGCGCg -3'
miRNA:   3'- -GGAG-CGGGCUGuGuGGCUUGAA--CGCG- -5'
28008 3' -55.1 NC_005887.1 + 40051 0.67 0.597853
Target:  5'- gCCUaCGCCCGAUACcguuCCGAucguccgGCgggGCGg -3'
miRNA:   3'- -GGA-GCGGGCUGUGu---GGCU-------UGaa-CGCg -5'
28008 3' -55.1 NC_005887.1 + 39992 0.73 0.301862
Target:  5'- gCCgUgGCCCGACAUGCaGGACgucgcggUGCGCa -3'
miRNA:   3'- -GG-AgCGGGCUGUGUGgCUUGa------ACGCG- -5'
28008 3' -55.1 NC_005887.1 + 39897 0.67 0.632136
Target:  5'- gCCUCG-UCGACgGCGCCGuAGC--GCGCg -3'
miRNA:   3'- -GGAGCgGGCUG-UGUGGC-UUGaaCGCG- -5'
28008 3' -55.1 NC_005887.1 + 39816 0.7 0.450893
Target:  5'- --cCGCCCGACAgCGCC----UUGCGCa -3'
miRNA:   3'- ggaGCGGGCUGU-GUGGcuugAACGCG- -5'
28008 3' -55.1 NC_005887.1 + 39773 0.66 0.687293
Target:  5'- cUCUgGUCgCGGCgcucGCGCCGAucgUUGCGCg -3'
miRNA:   3'- -GGAgCGG-GCUG----UGUGGCUug-AACGCG- -5'
28008 3' -55.1 NC_005887.1 + 39666 0.7 0.450893
Target:  5'- --cCGCCCGuacgcuucacGCGCACCagguGCUUGUGCu -3'
miRNA:   3'- ggaGCGGGC----------UGUGUGGcu--UGAACGCG- -5'
28008 3' -55.1 NC_005887.1 + 39335 0.68 0.576964
Target:  5'- gCUUUGCCCGcgGCGCUGGccGCagGCGCg -3'
miRNA:   3'- -GGAGCGGGCugUGUGGCU--UGaaCGCG- -5'
28008 3' -55.1 NC_005887.1 + 38892 0.66 0.687293
Target:  5'- gCCagGCCCGaACAgACCGAugcuCUgguagucGCGCc -3'
miRNA:   3'- -GGagCGGGC-UGUgUGGCUu---GAa------CGCG- -5'
28008 3' -55.1 NC_005887.1 + 38584 0.71 0.397376
Target:  5'- cCCUCGUCgagccaguaCGACGCgaacugcauguugcgGCCGuccAGCUUGCGCg -3'
miRNA:   3'- -GGAGCGG---------GCUGUG---------------UGGC---UUGAACGCG- -5'
28008 3' -55.1 NC_005887.1 + 37951 0.69 0.481139
Target:  5'- -aUCaGCCCGcauccguuACGCGCCaGAAUUUGUGCu -3'
miRNA:   3'- ggAG-CGGGC--------UGUGUGG-CUUGAACGCG- -5'
28008 3' -55.1 NC_005887.1 + 37680 0.68 0.587941
Target:  5'- cCCUCGCCgucuGCGCAgCGGuC-UGCGCg -3'
miRNA:   3'- -GGAGCGGgc--UGUGUgGCUuGaACGCG- -5'
28008 3' -55.1 NC_005887.1 + 36450 0.68 0.533594
Target:  5'- -aUCGCCUGGCG-ACCGAGCUcGaCGUu -3'
miRNA:   3'- ggAGCGGGCUGUgUGGCUUGAaC-GCG- -5'
28008 3' -55.1 NC_005887.1 + 36423 1.15 0.000354
Target:  5'- aCCUCGCCCGACACACCGAACUUGCGCa -3'
miRNA:   3'- -GGAGCGGGCUGUGUGGCUUGAACGCG- -5'
28008 3' -55.1 NC_005887.1 + 36392 0.66 0.698207
Target:  5'- -aUCGCCgGACGCGCC-AGCgaGCu- -3'
miRNA:   3'- ggAGCGGgCUGUGUGGcUUGaaCGcg -5'
28008 3' -55.1 NC_005887.1 + 36293 0.76 0.210029
Target:  5'- aCUCGUCCGGUugGCCGAuC-UGCGCg -3'
miRNA:   3'- gGAGCGGGCUGugUGGCUuGaACGCG- -5'
28008 3' -55.1 NC_005887.1 + 36015 0.72 0.366939
Target:  5'- cUCUUGUUCGGCagaACGCCGccguacAGCUUGCGCc -3'
miRNA:   3'- -GGAGCGGGCUG---UGUGGC------UUGAACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.